Analysis of interatomic Contacts of Structural Units in PDB entry:
6O7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O7D entry

There are 2 chains in PDB entry 6O7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 776
B	PRO 2	GLY 287

There are 36 helices in PDB entry 6O7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	16	22	Right-handed alpha
Helix 3	AA3	A	29	44	Right-handed alpha
Helix 4	AA4	A	48	54	Right-handed alpha
Helix 5	AA5	A	55	57	Right-handed 310
Helix 6	AA6	A	68	78	Right-handed alpha
Helix 7	AA7	A	79	84	Right-handed 310
Helix 8	AA8	A	86	104	Right-handed alpha
Helix 9	AA9	A	150	168	Right-handed alpha
Helix 10	AB1	A	171	184	Right-handed alpha
Helix 11	AB2	A	197	215	Right-handed alpha
Helix 12	AB3	A	243	248	Right-handed alpha
Helix 13	AB4	A	256	282	Right-handed alpha
Helix 14	AB5	A	284	286	Right-handed 310
Helix 15	AB6	A	303	326	Right-handed alpha
Helix 16	AB7	A	339	344	Right-handed 310
Helix 17	AB8	A	351	367	Right-handed alpha
Helix 18	AB9	A	417	425	Right-handed alpha
Helix 19	AC1	A	501	508	Right-handed alpha
Helix 20	AC2	A	524	531	Right-handed alpha
Helix 21	AC3	A	534	552	Right-handed alpha
Helix 22	AC4	A	552	559	Right-handed alpha
Helix 23	AC5	A	561	566	Right-handed alpha
Helix 24	AC6	A	596	614	Right-handed alpha
Helix 25	AC7	A	632	650	Right-handed alpha
Helix 26	AC8	A	674	688	Right-handed alpha
Helix 27	AC9	A	703	718	Right-handed alpha
Helix 28	AD1	A	724	729	Right-handed alpha
Helix 29	AD2	A	750	755	Right-handed alpha
Helix 30	AD3	A	760	776	Right-handed alpha
Helix 31	AD4	B	20	51	Right-handed alpha
Helix 32	AD5	B	73	77	Right-handed 310
Helix 33	AD6	B	86	99	Right-handed alpha
Helix 34	AD7	B	104	112	Right-handed alpha
Helix 35	AD8	B	164	171	Right-handed alpha
Helix 36	AD9	B	171	181	Right-handed alpha

There are 10 sheets in PDB entry 6O7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	295	301	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	330	338	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	429	435	anti-parallel
Strand 4	A	464	468	anti-parallel
Strand 5	A	481	485	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	586	first strand
Strand 2	A	589	595	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	654	656	parallel
Strand 6	A	672	673	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	694	695	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	155	162	anti-parallel
Strand 3	B	58	61	anti-parallel
Strand 4	B	64	68	anti-parallel
Strand 5	B	101	103	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	155	162	anti-parallel
Strand 3	B	3	11	anti-parallel
Strand 4	B	195	203	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	150	151	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	212	214	anti-parallel
Strand 3	B	279	281	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	245	247	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	271	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O7D