Analysis of interatomic Contacts of Structural Units in PDB entry:
6O7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O7E entry

There are 8 chains in PDB entry 6O7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ARG 777
B	VAL 23	GLY 185
C	ARG 4	LEU 287
D	MET 1	LEU 287
E	PRO 2	GLY 287
G	G -8	C 18
H	G 17	C 35
Y	MET 1	GLU 397

There are 77 helices in PDB entry 6O7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	12	Right-handed alpha
Helix 2	AA2	A	17	22	Right-handed alpha
Helix 3	AA3	A	30	44	Right-handed alpha
Helix 4	AA4	A	71	78	Right-handed alpha
Helix 5	AA5	A	86	104	Right-handed alpha
Helix 6	AA6	A	150	167	Right-handed alpha
Helix 7	AA7	A	171	183	Right-handed alpha
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	A	204	216	Right-handed alpha
Helix 10	AB1	A	218	224	Right-handed alpha
Helix 11	AB2	A	242	248	Right-handed alpha
Helix 12	AB3	A	257	282	Right-handed alpha
Helix 13	AB4	A	284	286	Right-handed 310
Helix 14	AB5	A	303	325	Right-handed alpha
Helix 15	AB6	A	351	368	Right-handed alpha
Helix 16	AB7	A	371	375	Right-handed 310
Helix 17	AB8	A	413	415	Right-handed 310
Helix 18	AB9	A	416	425	Right-handed alpha
Helix 19	AC1	A	501	506	Right-handed alpha
Helix 20	AC2	A	524	529	Right-handed alpha
Helix 21	AC3	A	534	551	Right-handed alpha
Helix 22	AC4	A	553	558	Right-handed alpha
Helix 23	AC5	A	561	566	Right-handed alpha
Helix 24	AC6	A	596	614	Right-handed alpha
Helix 25	AC7	A	634	647	Right-handed alpha
Helix 26	AC8	A	674	689	Right-handed alpha
Helix 27	AC9	A	702	719	Right-handed alpha
Helix 28	AD1	A	723	733	Right-handed alpha
Helix 29	AD2	A	742	746	Right-handed 310
Helix 30	AD3	A	749	756	Right-handed alpha
Helix 31	AD4	A	764	774	Right-handed alpha
Helix 32	AD5	B	36	41	Right-handed alpha
Helix 33	AD6	B	48	63	Right-handed alpha
Helix 34	AD7	B	72	87	Right-handed alpha
Helix 35	AD8	B	91	108	Right-handed alpha
Helix 36	AD9	B	116	134	Right-handed alpha
Helix 37	AE1	B	138	156	Right-handed alpha
Helix 38	AE2	B	165	182	Right-handed alpha
Helix 39	AE3	C	52	69	Right-handed alpha
Helix 40	AE4	C	115	120	Right-handed alpha
Helix 41	AE5	C	149	158	Right-handed alpha
Helix 42	AE6	C	206	223	Right-handed alpha
Helix 43	AE7	C	247	254	Right-handed alpha
Helix 44	AE8	C	275	280	Right-handed alpha
Helix 45	AE9	C	280	287	Right-handed alpha
Helix 46	AF1	D	52	69	Right-handed alpha
Helix 47	AF2	D	115	120	Right-handed alpha
Helix 48	AF3	D	149	151	Right-handed 310
Helix 49	AF4	D	152	159	Right-handed alpha
Helix 50	AF5	D	206	223	Right-handed alpha
Helix 51	AF6	D	228	232	Right-handed 310
Helix 52	AF7	D	247	254	Right-handed alpha
Helix 53	AF8	D	275	280	Right-handed alpha
Helix 54	AF9	D	280	285	Right-handed alpha
Helix 55	AG1	E	21	36	Right-handed alpha
Helix 56	AG2	E	37	51	Right-handed alpha
Helix 57	AG3	E	70	74	Right-handed 310
Helix 58	AG4	E	76	81	Right-handed alpha
Helix 59	AG5	E	88	98	Right-handed alpha
Helix 60	AG6	E	103	111	Right-handed alpha
Helix 61	AG7	E	164	171	Right-handed alpha
Helix 62	AG8	E	171	179	Right-handed alpha
Helix 63	AG9	E	187	191	Right-handed 310
Helix 64	AH1	Y	21	25	Right-handed 310
Helix 65	AH2	Y	36	44	Right-handed alpha
Helix 66	AH3	Y	52	60	Right-handed alpha
Helix 67	AH4	Y	61	62	Right-handed 310
Helix 68	AH5	Y	65	67	Right-handed 310
Helix 69	AH6	Y	113	133	Right-handed alpha
Helix 70	AH7	Y	160	169	Right-handed alpha
Helix 71	AH8	Y	204	207	Right-handed 310
Helix 72	AH9	Y	218	220	Right-handed 310
Helix 73	AI1	Y	258	263	Right-handed alpha
Helix 74	AI2	Y	284	294	Right-handed alpha
Helix 75	AI3	Y	317	323	Right-handed alpha
Helix 76	AI4	Y	345	349	Right-handed 310
Helix 77	AI5	Y	354	365	Right-handed alpha

There are 24 sheets in PDB entry 6O7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	295	301	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	330	338	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	395	397	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	411	412	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	450	453	anti-parallel
Strand 3	A	431	435	anti-parallel
Strand 4	A	464	468	anti-parallel
Strand 5	A	481	485	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	586	first strand
Strand 2	A	589	595	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	620	627	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	672	673	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	191	200	anti-parallel
Strand 3	C	7	16	anti-parallel
Strand 4	C	238	243	anti-parallel
Strand 5	C	261	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	99	101	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	181	186	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	196	200	anti-parallel
Strand 3	D	7	17	anti-parallel
Strand 4	D	236	244	anti-parallel
Strand 5	D	260	261	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	99	101	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	169	first strand
Strand 2	D	180	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	61	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	3	11	anti-parallel
Strand 4	E	195	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	101	102	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	132	first strand
Strand 2	E	143	151	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	212	214	anti-parallel
Strand 3	E	279	281	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	232	first strand
Strand 2	E	244	247	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	236	first strand
Strand 2	E	239	240	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	263	first strand
Strand 2	E	271	273	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	248	251	first strand
Strand 2	Y	4	8	anti-parallel
Strand 3	Y	393	396	anti-parallel
Strand 4	Y	331	334	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	19	20	first strand
Strand 2	Y	100	101	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	209	211	first strand
Strand 2	Y	253	255	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	236	243	first strand
Strand 2	Y	222	230	anti-parallel
Strand 3	Y	383	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O7E