Analysis of interatomic Contacts of Structural Units in PDB entry:
6O83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O83 entry

There are 3 chains in PDB entry 6O83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 38	LEU 1012
B	MET 1	GLY 75
C	GLN 37	MET 285

There are 82 helices in PDB entry 6O83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	60	Right-handed alpha
Helix 2	AA2	A	73	79	Right-handed 310
Helix 3	AA3	A	91	102	Right-handed alpha
Helix 4	AA4	A	117	123	Right-handed 310
Helix 5	AA5	A	132	146	Right-handed alpha
Helix 6	AA6	A	218	222	Right-handed 310
Helix 7	AA7	A	281	285	Right-handed 310
Helix 8	AA8	A	286	304	Right-handed alpha
Helix 9	AA9	A	314	332	Right-handed alpha
Helix 10	AB1	A	339	349	Right-handed alpha
Helix 11	AB2	A	354	375	Right-handed alpha
Helix 12	AB3	A	389	392	Right-handed 310
Helix 13	AB4	A	410	418	Right-handed alpha
Helix 14	AB5	A	418	427	Right-handed alpha
Helix 15	AB6	A	436	450	Right-handed alpha
Helix 16	AB7	A	479	483	Right-handed 310
Helix 17	AB8	A	486	499	Right-handed alpha
Helix 18	AB9	A	500	503	Right-handed 310
Helix 19	AC1	A	515	520	Right-handed 310
Helix 20	AC2	A	522	528	Right-handed alpha
Helix 21	AC3	A	538	553	Right-handed alpha
Helix 22	AC4	A	578	582	Right-handed 310
Helix 23	AC5	A	601	618	Right-handed alpha
Helix 24	AC6	A	618	628	Right-handed alpha
Helix 25	AC7	A	632	638	Right-handed alpha
Helix 26	AC8	A	643	656	Right-handed alpha
Helix 27	AC9	A	662	679	Right-handed alpha
Helix 28	AD1	A	679	689	Right-handed alpha
Helix 29	AD2	A	718	736	Right-handed alpha
Helix 30	AD3	A	743	752	Right-handed alpha
Helix 31	AD4	A	784	793	Right-handed alpha
Helix 32	AD5	A	818	834	Right-handed alpha
Helix 33	AD6	A	840	850	Right-handed alpha
Helix 34	AD7	A	855	876	Right-handed alpha
Helix 35	AD8	A	879	883	Right-handed 310
Helix 36	AD9	A	891	893	Right-handed 310
Helix 37	AE1	A	926	937	Right-handed alpha
Helix 38	AE2	A	958	964	Right-handed alpha
Helix 39	AE3	A	969	979	Right-handed alpha
Helix 40	AE4	B	22	35	Right-handed alpha
Helix 41	AE5	B	37	41	Right-handed 310
Helix 42	AE6	C	46	60	Right-handed alpha
Helix 43	AE7	C	73	79	Right-handed 310
Helix 44	AE8	C	91	101	Right-handed alpha
Helix 45	AE9	C	117	123	Right-handed 310
Helix 46	AF1	C	132	147	Right-handed alpha
Helix 47	AF2	C	268	272	Right-handed 310
Helix 48	AF3	C	281	285	Right-handed 310
Helix 49	AF4	C	287	304	Right-handed alpha
Helix 50	AF5	C	314	332	Right-handed alpha
Helix 51	AF6	C	339	349	Right-handed alpha
Helix 52	AF7	C	354	375	Right-handed alpha
Helix 53	AF8	C	389	392	Right-handed 310
Helix 54	AF9	C	410	427	Right-handed alpha
Helix 55	AG1	C	436	450	Right-handed alpha
Helix 56	AG2	C	479	483	Right-handed 310
Helix 57	AG3	C	486	499	Right-handed alpha
Helix 58	AG4	C	500	503	Right-handed 310
Helix 59	AG5	C	514	520	Right-handed 310
Helix 60	AG6	C	522	528	Right-handed alpha
Helix 61	AG7	C	538	553	Right-handed alpha
Helix 62	AG8	C	578	582	Right-handed 310
Helix 63	AG9	C	601	618	Right-handed alpha
Helix 64	AH1	C	618	628	Right-handed alpha
Helix 65	AH2	C	632	638	Right-handed alpha
Helix 66	AH3	C	643	654	Right-handed alpha
Helix 67	AH4	C	662	679	Right-handed alpha
Helix 68	AH5	C	679	689	Right-handed alpha
Helix 69	AH6	C	718	736	Right-handed alpha
Helix 70	AH7	C	743	753	Right-handed alpha
Helix 71	AH8	C	784	793	Right-handed alpha
Helix 72	AH9	C	818	835	Right-handed alpha
Helix 73	AI1	C	840	850	Right-handed alpha
Helix 74	AI2	C	855	876	Right-handed alpha
Helix 75	AI3	C	879	883	Right-handed 310
Helix 76	AI4	C	891	893	Right-handed 310
Helix 77	AI5	C	926	937	Right-handed alpha
Helix 78	AI6	C	959	964	Right-handed alpha
Helix 79	AI7	C	969	979	Right-handed alpha
Helix 80	AI8	D	22	35	Right-handed alpha
Helix 81	AI9	D	37	41	Right-handed 310
Helix 82	AJ1	D	55	59	Right-handed 310

There are 18 sheets in PDB entry 6O83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	63	67	parallel
Strand 3	A	39	43	parallel
Strand 4	A	125	128	parallel
Strand 5	A	149	156	parallel
Strand 6	A	159	165	anti-parallel
Strand 7	A	383	387	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	261	263	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	209	213	anti-parallel
Strand 3	A	249	257	anti-parallel
Strand 4	A	182	188	anti-parallel
Strand 5	A	193	196	anti-parallel
Strand 6	A	236	238	anti-parallel
Strand 7	A	230	231	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	509	first strand
Strand 2	A	458	462	parallel
Strand 3	A	429	433	parallel
Strand 4	A	531	534	parallel
Strand 5	A	556	562	parallel
Strand 6	A	565	571	anti-parallel
Strand 7	A	885	889	anti-parallel
Strand 8	A	894	898	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	851	853	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	905	908	first strand
Strand 2	A	911	914	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	923	first strand
Strand 2	A	1008	1011	parallel
Strand 3	A	988	996	anti-parallel
Strand 4	A	941	947	anti-parallel
Strand 5	A	950	954	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	923	first strand
Strand 2	A	1008	1011	parallel
Strand 3	A	988	996	anti-parallel
Strand 4	A	1002	1003	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	63	67	parallel
Strand 3	C	39	43	parallel
Strand 4	C	125	128	parallel
Strand 5	C	149	156	parallel
Strand 6	C	159	165	anti-parallel
Strand 7	C	383	387	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	261	263	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	248	257	anti-parallel
Strand 3	C	182	189	anti-parallel
Strand 4	C	194	196	anti-parallel
Strand 5	C	236	238	anti-parallel
Strand 6	C	230	231	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	509	first strand
Strand 2	C	458	462	parallel
Strand 3	C	429	433	parallel
Strand 4	C	531	534	parallel
Strand 5	C	556	562	parallel
Strand 6	C	565	571	anti-parallel
Strand 7	C	885	889	anti-parallel
Strand 8	C	894	898	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	592	first strand
Strand 2	C	851	853	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	905	908	first strand
Strand 2	C	911	914	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	922	first strand
Strand 2	C	1008	1011	parallel
Strand 3	C	988	996	anti-parallel
Strand 4	C	941	947	anti-parallel
Strand 5	C	950	954	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	922	first strand
Strand 2	C	1008	1011	parallel
Strand 3	C	988	996	anti-parallel
Strand 4	C	1002	1003	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O83

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O83