Analysis of interatomic Contacts of Structural Units in PDB entry:
6O89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O89 entry

There are 2 chains in PDB entry 6O89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	CYS 347
L	ASP 1	CYS 338

There are 16 helices in PDB entry 6O89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	62	65	Right-handed 310
Helix 3	AA3	H	74	76	Right-handed 310
Helix 4	AA4	H	87	91	Right-handed 310
Helix 5	AA5	H	149	153	Right-handed 310
Helix 6	AA6	H	174	178	Right-handed 310
Helix 7	AA7	H	185	188	Right-handed 310
Helix 8	AA8	H	197	199	Right-handed 310
Helix 9	AA9	H	210	214	Right-handed 310
Helix 10	AB1	H	287	289	Right-handed 310
Helix 11	AB2	H	318	321	Right-handed 310
Helix 12	AB3	H	332	335	Right-handed 310
Helix 13	AB4	L	84	88	Right-handed 310
Helix 14	AB5	L	198	202	Right-handed 310
Helix 15	AB6	L	245	250	Right-handed alpha
Helix 16	AB7	L	307	313	Right-handed alpha

There are 17 sheets in PDB entry 6O89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	128	first strand
Strand 2	H	139	145	anti-parallel
Strand 3	H	201	206	anti-parallel
Strand 4	H	191	196	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	236	240	parallel
Strand 3	H	215	223	anti-parallel
Strand 4	H	154	160	anti-parallel
Strand 5	H	167	172	anti-parallel
Strand 6	H	181	183	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	236	240	parallel
Strand 3	H	215	223	anti-parallel
Strand 4	H	229	232	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	255	first strand
Strand 2	H	266	276	anti-parallel
Strand 3	H	307	316	anti-parallel
Strand 4	H	294	296	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	255	first strand
Strand 2	H	266	276	anti-parallel
Strand 3	H	307	316	anti-parallel
Strand 4	H	300	301	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	285	first strand
Strand 2	H	326	331	anti-parallel
Strand 3	H	336	341	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	49	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	126	first strand
Strand 2	L	138	144	anti-parallel
Strand 3	L	189	194	anti-parallel
Strand 4	L	181	186	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	132	first strand
Strand 2	L	221	225	parallel
Strand 3	L	203	209	anti-parallel
Strand 4	L	152	157	anti-parallel
Strand 5	L	164	168	anti-parallel
Strand 6	L	172	173	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	132	first strand
Strand 2	L	221	225	parallel
Strand 3	L	203	209	anti-parallel
Strand 4	L	216	217	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	242	first strand
Strand 2	L	253	263	anti-parallel
Strand 3	L	297	306	anti-parallel
Strand 4	L	283	287	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	277	278	first strand
Strand 2	L	269	274	anti-parallel
Strand 3	L	315	321	anti-parallel
Strand 4	L	329	334	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O89

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O89