Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O8B entry

There are 4 chains in PDB entry 6O8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 369TRP 379
E
 MET 368TRP 379
A
 PRO -5GLU 656
B
 ASP -2MET 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6O8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 61Right-handed alpha
Helix 2
AA2
A
93 99Right-handed alpha
Helix 3
AA3
A
108 129Right-handed alpha
Helix 4
AA4
A
181 190Right-handed alpha
Helix 5
AA5
A
200 217Right-handed alpha
Helix 6
AA6
A
232 240Right-handed alpha
Helix 7
AA7
A
270 285Right-handed alpha
Helix 8
AA8
A
294 308Right-handed alpha
Helix 9
AA9
A
331 344Right-handed alpha
Helix 10
AB1
A
346 350Right-handed 310
Helix 11
AB2
A
366 370Right-handed 310
Helix 12
AB3
A
407 469Right-handed alpha
Helix 13
AB4
A
472 480Right-handed alpha
Helix 14
AB5
A
495 526Right-handed alpha
Helix 15
AB6
A
534 540Right-handed alpha
Helix 16
AB7
A
543 546Right-handed 310
Helix 17
AB8
A
547 572Right-handed alpha
Helix 18
AB9
A
576 604Right-handed alpha
Helix 19
AC1
A
604 652Right-handed alpha
Helix 20
AC2
B
53 59Right-handed alpha
Helix 21
AC3
B
93 99Right-handed alpha
Helix 22
AC4
B
100 104Right-handed 310
Helix 23
AC5
B
108 130Right-handed alpha
Helix 24
AC6
B
176 180Right-handed 310
Helix 25
AC7
B
181 190Right-handed alpha
Helix 26
AC8
B
201 217Right-handed alpha
Helix 27
AC9
B
230 241Right-handed alpha
Helix 28
AD1
B
270 285Right-handed alpha
Helix 29
AD2
B
294 307Right-handed alpha
Helix 30
AD3
B
331 344Right-handed alpha
Helix 31
AD4
B
346 350Right-handed 310
Helix 32
AD5
B
366 370Right-handed 310
Helix 33
AD6
B
407 475Right-handed alpha
Helix 34
AD7
B
475 483Right-handed alpha
Helix 35
AD8
B
499 504Right-handed alpha
Helix 36
AD9
B
505 509Right-handed 310
Helix 37
AE1
B
512 526Right-handed alpha
Helix 38
AE2
B
533 537Right-handed 310
Helix 39
AE3
B
543 546Right-handed 310
Helix 40
AE4
B
547 571Right-handed alpha
Helix 41
AE5
B
576 604Right-handed alpha
Helix 42
AE6
B
604 640Right-handed alpha
Helix 43
AE7
B
642 647Right-handed alpha
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There are 8 sheets in PDB entry 6O8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
7 17anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
82 86anti-parallel
Strand 6
A
70 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
151 154anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
247 250parallel
Strand 3
A
257 260anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
309 315anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
357 358anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
7 17anti-parallel
Strand 3
B
21 28anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
82 86anti-parallel
Strand 6
B
70 75anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
151 155anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
247 249parallel
Strand 3
B
258 260anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 326first strand
Strand 2
B
309 315anti-parallel
Strand 3
B
379 382parallel
Strand 4
B
351 354anti-parallel
Strand 5
B
357 358anti-parallel
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