Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O8D entry

There are 3 chains in PDB entry 6O8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 20	HIS 134
L	ASP 1	CYS 338
H	GLN 1	CYS 347

There are 12 helices in PDB entry 6O8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	31	33	Right-handed 310
Helix 2	AA2	L	84	88	Right-handed 310
Helix 3	AA3	L	198	202	Right-handed 310
Helix 4	AA4	L	245	250	Right-handed alpha
Helix 5	AA5	L	307	311	Right-handed alpha
Helix 6	AA6	H	52	56	Right-handed 310
Helix 7	AA7	H	61	65	Right-handed 310
Helix 8	AA8	H	87	91	Right-handed 310
Helix 9	AA9	H	149	153	Right-handed 310
Helix 10	AB1	H	185	188	Right-handed 310
Helix 11	AB2	H	197	199	Right-handed 310
Helix 12	AB3	H	210	214	Right-handed 310

There are 20 sheets in PDB entry 6O8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	94	100	anti-parallel
Strand 4	C	88	90	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	79	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	53	57	anti-parallel
Strand 4	C	109	112	anti-parallel
Strand 5	C	131	132	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	108	110	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	53	first strand
Strand 2	L	40	43	anti-parallel
Strand 3	L	90	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	124	first strand
Strand 2	L	143	144	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	131	first strand
Strand 2	L	221	224	parallel
Strand 3	L	204	208	anti-parallel
Strand 4	L	153	156	anti-parallel
Strand 5	L	164	167	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	141	first strand
Strand 2	L	191	194	anti-parallel
Strand 3	L	181	184	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	240	242	first strand
Strand 2	L	253	259	anti-parallel
Strand 3	L	299	306	anti-parallel
Strand 4	L	283	287	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	277	278	first strand
Strand 2	L	269	274	anti-parallel
Strand 3	L	315	321	anti-parallel
Strand 4	L	329	334	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	114	117	parallel
Strand 3	H	92	95	anti-parallel
Strand 4	H	37	39	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	99	first strand
Strand 2	H	107	110	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	128	first strand
Strand 2	H	142	144	anti-parallel
Strand 3	H	201	206	anti-parallel
Strand 4	H	139	140	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	128	first strand
Strand 2	H	142	144	anti-parallel
Strand 3	H	201	206	anti-parallel
Strand 4	H	192	196	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	236	240	parallel
Strand 3	H	215	223	anti-parallel
Strand 4	H	154	160	anti-parallel
Strand 5	H	166	172	anti-parallel
Strand 6	H	181	183	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	236	240	parallel
Strand 3	H	215	223	anti-parallel
Strand 4	H	229	231	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	255	first strand
Strand 2	H	266	276	anti-parallel
Strand 3	H	307	316	anti-parallel
Strand 4	H	294	296	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	255	first strand
Strand 2	H	266	276	anti-parallel
Strand 3	H	307	316	anti-parallel
Strand 4	H	300	301	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	285	first strand
Strand 2	H	326	331	anti-parallel
Strand 3	H	336	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8D