Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O8E entry

There are 6 chains in PDB entry 6O8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ARG 593
B	GLY 3	ILE 592
C	G 1	C 20
D	G 1	C 20
E	G 1	C 20
F	G 1	C 20

There are 48 helices in PDB entry 6O8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	44	57	Right-handed alpha
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	103	106	Right-handed 310
Helix 5	AA5	A	116	133	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	150	157	Right-handed alpha
Helix 8	AA8	A	168	179	Right-handed alpha
Helix 9	AA9	A	252	277	Right-handed alpha
Helix 10	AB1	A	279	300	Right-handed alpha
Helix 11	AB2	A	305	308	Right-handed 310
Helix 12	AB3	A	309	314	Right-handed alpha
Helix 13	AB4	A	324	329	Right-handed alpha
Helix 14	AB5	A	339	364	Right-handed alpha
Helix 15	AB6	A	368	374	Right-handed 310
Helix 16	AB7	A	378	386	Right-handed alpha
Helix 17	AB8	A	397	404	Right-handed alpha
Helix 18	AB9	A	429	444	Right-handed alpha
Helix 19	AC1	A	454	468	Right-handed alpha
Helix 20	AC2	A	480	494	Right-handed alpha
Helix 21	AC3	A	526	529	Right-handed 310
Helix 22	AC4	A	530	539	Right-handed alpha
Helix 23	AC5	A	540	542	Right-handed 310
Helix 24	AC6	A	557	582	Right-handed alpha
Helix 25	AC7	B	16	30	Right-handed alpha
Helix 26	AC8	B	44	57	Right-handed alpha
Helix 27	AC9	B	66	81	Right-handed alpha
Helix 28	AD1	B	103	106	Right-handed 310
Helix 29	AD2	B	116	133	Right-handed alpha
Helix 30	AD3	B	142	146	Right-handed 310
Helix 31	AD4	B	150	156	Right-handed alpha
Helix 32	AD5	B	168	179	Right-handed alpha
Helix 33	AD6	B	254	276	Right-handed alpha
Helix 34	AD7	B	279	300	Right-handed alpha
Helix 35	AD8	B	305	308	Right-handed 310
Helix 36	AD9	B	309	314	Right-handed alpha
Helix 37	AE1	B	324	329	Right-handed alpha
Helix 38	AE2	B	339	364	Right-handed alpha
Helix 39	AE3	B	368	374	Right-handed 310
Helix 40	AE4	B	378	386	Right-handed alpha
Helix 41	AE5	B	397	404	Right-handed alpha
Helix 42	AE6	B	429	444	Right-handed alpha
Helix 43	AE7	B	454	468	Right-handed alpha
Helix 44	AE8	B	480	493	Right-handed alpha
Helix 45	AE9	B	526	529	Right-handed 310
Helix 46	AF1	B	530	539	Right-handed alpha
Helix 47	AF2	B	540	542	Right-handed 310
Helix 48	AF3	B	557	581	Right-handed alpha

There are 12 sheets in PDB entry 6O8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	136	140	parallel
Strand 3	A	60	63	parallel
Strand 4	A	334	337	parallel
Strand 5	A	389	393	parallel
Strand 6	A	34	39	parallel
Strand 7	A	408	410	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	112	115	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	107	109	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	240	243	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	192	196	parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	210	216	anti-parallel
Strand 5	A	221	228	anti-parallel
Strand 6	A	234	238	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	425	first strand
Strand 2	A	548	552	parallel
Strand 3	A	514	519	parallel
Strand 4	A	447	451	parallel
Strand 5	A	498	501	parallel
Strand 6	A	472	475	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	136	140	parallel
Strand 3	B	60	63	parallel
Strand 4	B	334	338	parallel
Strand 5	B	388	393	parallel
Strand 6	B	34	39	parallel
Strand 7	B	408	410	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	112	115	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	107	109	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	240	243	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	192	195	parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	210	217	anti-parallel
Strand 5	B	220	228	anti-parallel
Strand 6	B	234	237	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	425	first strand
Strand 2	B	548	552	parallel
Strand 3	B	514	519	parallel
Strand 4	B	447	451	parallel
Strand 5	B	498	501	parallel
Strand 6	B	472	475	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8E