Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O8H entry

There are 3 chains in PDB entry 6O8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 593
B
 C 4 C 16
C
 A 4 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6O8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
114 131Right-handed alpha
Helix 5
AA5
A
150 157Right-handed alpha
Helix 6
AA6
A
168 179Right-handed alpha
Helix 7
AA7
A
252 277Right-handed alpha
Helix 8
AA8
A
279 300Right-handed alpha
Helix 9
AA9
A
305 308Right-handed 310
Helix 10
AB1
A
309 314Right-handed alpha
Helix 11
AB2
A
324 329Right-handed 310
Helix 12
AB3
A
339 364Right-handed alpha
Helix 13
AB4
A
368 374Right-handed 310
Helix 14
AB5
A
378 386Right-handed alpha
Helix 15
AB6
A
397 404Right-handed alpha
Helix 16
AB7
A
429 444Right-handed alpha
Helix 17
AB8
A
454 468Right-handed alpha
Helix 18
AB9
A
480 494Right-handed alpha
Helix 19
AC1
A
530 539Right-handed alpha
Helix 20
AC2
A
540 542Right-handed 310
Helix 21
AC3
A
557 582Right-handed alpha
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There are 4 sheets in PDB entry 6O8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
136 141parallel
Strand 3
A
60 64parallel
Strand 4
A
334 338parallel
Strand 5
A
388 393parallel
Strand 6
A
34 39parallel
Strand 7
A
408 410parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
240 243anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
192 196parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
210 216anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
234 237anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
548 552parallel
Strand 3
A
514 520parallel
Strand 4
A
447 451parallel
Strand 5
A
498 501parallel
Strand 6
A
472 474parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il