Analysis of interatomic Contacts of Structural Units in PDB entry:
6O9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O9M entry

There are 8 chains in PDB entry 6O9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	TYR 11	GLU 742
1	LYS 114	LYS 546
2	SER 6	GLN 458
3	MET 1	LEU 212
4	ASP 6	LYS 300
5	VAL 2	SER 67
6	ARG 10	GLY 394
7	PRO 30	VAL 728

There are135 helices in PDB entry 6O9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	20	32	Right-handed alpha
Helix 2	AA2	0	47	62	Right-handed alpha
Helix 3	AA3	0	76	98	Right-handed alpha
Helix 4	AA4	0	127	140	Right-handed alpha
Helix 5	AA5	0	155	167	Right-handed alpha
Helix 6	AA6	0	178	185	Right-handed alpha
Helix 7	AA7	0	192	200	Right-handed alpha
Helix 8	AA8	0	209	213	Right-handed alpha
Helix 9	AA9	0	238	248	Right-handed alpha
Helix 10	AB1	0	252	273	Right-handed alpha
Helix 11	AB2	0	277	291	Right-handed alpha
Helix 12	AB3	0	298	304	Right-handed 310
Helix 13	AB4	0	324	342	Right-handed alpha
Helix 14	AB5	0	343	349	Right-handed 310
Helix 15	AB6	0	353	365	Right-handed alpha
Helix 16	AB7	0	375	385	Right-handed alpha
Helix 17	AB8	0	390	410	Right-handed alpha
Helix 18	AB9	0	440	451	Right-handed alpha
Helix 19	AC1	0	463	467	Right-handed 310
Helix 20	AC2	0	516	518	Right-handed 310
Helix 21	AC3	0	519	531	Right-handed alpha
Helix 22	AC4	0	541	549	Right-handed alpha
Helix 23	AC5	0	549	555	Right-handed alpha
Helix 24	AC6	0	557	565	Right-handed alpha
Helix 25	AC7	0	573	590	Right-handed alpha
Helix 26	AC8	0	631	642	Right-handed alpha
Helix 27	AC9	0	647	664	Right-handed alpha
Helix 28	AD1	0	686	692	Right-handed alpha
Helix 29	AD2	0	693	700	Right-handed alpha
Helix 30	AD3	0	709	726	Right-handed alpha
Helix 31	AD4	1	115	121	Right-handed alpha
Helix 32	AD5	1	121	134	Right-handed alpha
Helix 33	AD6	1	138	146	Right-handed alpha
Helix 34	AD7	1	149	154	Right-handed alpha
Helix 35	AD8	1	155	157	Right-handed 310
Helix 36	AD9	1	193	198	Right-handed alpha
Helix 37	AE1	1	200	211	Right-handed alpha
Helix 38	AE2	1	216	231	Right-handed alpha
Helix 39	AE3	1	236	261	Right-handed alpha
Helix 40	AE4	1	264	271	Right-handed alpha
Helix 41	AE5	1	295	323	Right-handed alpha
Helix 42	AE6	1	351	366	Right-handed alpha
Helix 43	AE7	1	374	384	Right-handed alpha
Helix 44	AE8	1	390	410	Right-handed alpha
Helix 45	AE9	1	420	435	Right-handed alpha
Helix 46	AF1	1	448	453	Right-handed alpha
Helix 47	AF2	1	457	477	Right-handed alpha
Helix 48	AF3	1	478	482	Right-handed 310
Helix 49	AF4	1	486	502	Right-handed alpha
Helix 50	AF5	1	504	510	Right-handed alpha
Helix 51	AF6	1	515	520	Right-handed alpha
Helix 52	AF7	1	521	540	Right-handed alpha
Helix 53	AF8	2	22	26	Right-handed 310
Helix 54	AF9	2	27	34	Right-handed alpha
Helix 55	AG1	2	35	37	Right-handed 310
Helix 56	AG2	2	38	47	Right-handed alpha
Helix 57	AG3	2	51	56	Right-handed alpha
Helix 58	AG4	2	67	73	Right-handed alpha
Helix 59	AG5	2	79	93	Right-handed alpha
Helix 60	AG6	2	111	121	Right-handed alpha
Helix 61	AG7	2	144	165	Right-handed alpha
Helix 62	AG8	2	175	180	Right-handed alpha
Helix 63	AG9	2	198	205	Right-handed alpha
Helix 64	AH1	2	209	218	Right-handed alpha
Helix 65	AH2	2	227	239	Right-handed alpha
Helix 66	AH3	2	248	253	Right-handed alpha
Helix 67	AH4	2	255	268	Right-handed alpha
Helix 68	AH5	2	274	278	Right-handed 310
Helix 69	AH6	2	288	293	Right-handed alpha
Helix 70	AH7	2	309	313	Right-handed 310
Helix 71	AH8	2	321	330	Right-handed alpha
Helix 72	AH9	2	348	353	Right-handed alpha
Helix 73	AI1	2	360	369	Right-handed alpha
Helix 74	AI2	2	386	399	Right-handed alpha
Helix 75	AI3	2	415	429	Right-handed alpha
Helix 76	AI4	2	447	458	Right-handed alpha
Helix 77	AI5	3	68	78	Right-handed alpha
Helix 78	AI6	3	81	87	Right-handed alpha
Helix 79	AI7	3	87	92	Right-handed alpha
Helix 80	AI8	3	96	111	Right-handed alpha
Helix 81	AI9	3	116	121	Right-handed alpha
Helix 82	AJ1	3	128	188	Right-handed alpha
Helix 83	AJ2	3	197	212	Right-handed alpha
Helix 84	AJ3	4	18	28	Right-handed alpha
Helix 85	AJ4	4	33	50	Right-handed alpha
Helix 86	AJ5	4	101	119	Right-handed alpha
Helix 87	AJ6	4	132	149	Right-handed alpha
Helix 88	AJ7	4	173	188	Right-handed alpha
Helix 89	AJ8	4	200	211	Right-handed alpha
Helix 90	AJ9	4	225	230	Right-handed alpha
Helix 91	AK1	5	13	18	Right-handed alpha
Helix 92	AK2	5	18	26	Right-handed alpha
Helix 93	AK3	5	49	57	Right-handed alpha
Helix 94	AK4	5	57	67	Right-handed alpha
Helix 95	AK5	6	11	15	Right-handed alpha
Helix 96	AK6	6	16	24	Right-handed alpha
Helix 97	AK7	6	33	42	Right-handed alpha
Helix 98	AK8	6	68	73	Right-handed 310
Helix 99	AK9	6	79	99	Right-handed alpha
Helix 100	AL1	6	123	134	Right-handed alpha
Helix 101	AL2	6	135	137	Right-handed 310
Helix 102	AL3	6	144	158	Right-handed alpha
Helix 103	AL4	6	184	193	Right-handed alpha
Helix 104	AL5	6	205	214	Right-handed alpha
Helix 105	AL6	6	224	237	Right-handed alpha
Helix 106	AL7	6	314	319	Right-handed alpha
Helix 107	AL8	6	321	325	Right-handed 310
Helix 108	AL9	6	339	344	Right-handed alpha
Helix 109	AM1	6	368	378	Right-handed alpha
Helix 110	AM2	7	52	65	Right-handed alpha
Helix 111	AM3	7	93	98	Right-handed alpha
Helix 112	AM4	7	132	145	Right-handed alpha
Helix 113	AM5	7	153	157	Right-handed 310
Helix 114	AM6	7	183	188	Right-handed alpha
Helix 115	AM7	7	190	195	Right-handed alpha
Helix 116	AM8	7	247	259	Right-handed alpha
Helix 117	AM9	7	277	286	Right-handed alpha
Helix 118	AN1	7	317	328	Right-handed alpha
Helix 119	AN2	7	345	357	Right-handed alpha
Helix 120	AN3	7	367	382	Right-handed alpha
Helix 121	AN4	7	421	434	Right-handed alpha
Helix 122	AN5	7	447	458	Right-handed alpha
Helix 123	AN6	7	480	485	Right-handed alpha
Helix 124	AN7	7	493	498	Right-handed alpha
Helix 125	AN8	7	515	517	Right-handed 310
Helix 126	AN9	7	518	525	Right-handed alpha
Helix 127	AO1	7	528	536	Right-handed alpha
Helix 128	AO2	7	537	553	Right-handed alpha
Helix 129	AO3	7	564	575	Right-handed alpha
Helix 130	AO4	7	585	598	Right-handed alpha
Helix 131	AO5	7	608	614	Right-handed alpha
Helix 132	AO6	7	632	644	Right-handed alpha
Helix 133	AO7	7	667	684	Right-handed alpha
Helix 134	AO8	7	705	718	Right-handed alpha
Helix 135	AO9	7	720	724	Right-handed 310

There are 17 sheets in PDB entry 6O9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	39	40	first strand
Strand 2	455	457	parallel
Strand 3	231	234	parallel
Strand 4	71	74	parallel
Strand 5	205	208	parallel
Strand 6	107	108	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	249	250	first strand
Strand 2	433	436	anti-parallel
Strand 3	415	418	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	491	494	first strand
Strand 2	676	679	parallel
Strand 3	617	619	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	536	539	first strand
Strand 2	0	596	599	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	96	97	first strand
Strand 2	2	109	110	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	404	405	first strand
Strand 2	5	8	11	anti-parallel
Strand 3	5	42	45	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	407	408	first strand
Strand 2	2	440	443	anti-parallel
Strand 3	2	431	435	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	59	60	first strand
Strand 2	4	12	14	parallel
Strand 3	4	160	164	parallel
Strand 4	4	190	195	parallel
Strand 5	4	213	216	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	264	267	first strand
Strand 2	6	249	253	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	115	121	first strand
Strand 2	6	103	110	anti-parallel
Strand 3	6	60	67	parallel
Strand 4	6	168	171	parallel
Strand 5	6	197	200	parallel
Strand 6	6	220	221	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	256	257	first strand
Strand 2	6	289	290	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	331	334	first strand
Strand 2	6	357	360	anti-parallel
Strand 3	6	366	367	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	164	165	first strand
Strand 2	7	293	294	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	338	339	first strand
Strand 2	7	489	490	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	390	391	first strand
Strand 2	7	406	409	parallel
Strand 3	7	362	365	parallel
Strand 4	7	438	441	parallel
Strand 5	7	463	466	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	509	512	first strand
Strand 2	7	657	664	parallel
Strand 3	7	622	625	parallel
Strand 4	7	558	561	parallel
Strand 5	7	606	607	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	509	512	first strand
Strand 2	7	657	664	parallel
Strand 3	7	505	507	parallel
Strand 4	7	686	687	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O9M