Analysis of interatomic Contacts of Structural Units in PDB entry:
6OAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OAA entry

There are 6 chains in PDB entry 6OAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 209	ARG 717
C	ASN 209	GLN 782
D	ASN 209	PHE 791
E	ASN 209	GLN 670
G	LEU 116	GLY 580
H	GLN 2	GLN 49

There are 98 helices in PDB entry 6OAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	219	228	Right-handed alpha
Helix 2	AA2	B	231	236	Right-handed alpha
Helix 3	AA3	B	261	272	Right-handed alpha
Helix 4	AA4	B	296	305	Right-handed alpha
Helix 5	AA5	B	330	345	Right-handed alpha
Helix 6	AA6	B	359	363	Right-handed 310
Helix 7	AA7	B	364	369	Right-handed 310
Helix 8	AA8	B	386	395	Right-handed alpha
Helix 9	AA9	B	405	413	Right-handed alpha
Helix 10	AB1	B	418	436	Right-handed alpha
Helix 11	AB2	B	458	468	Right-handed alpha
Helix 12	AB3	B	494	509	Right-handed alpha
Helix 13	AB4	B	511	517	Right-handed alpha
Helix 14	AB5	B	536	544	Right-handed alpha
Helix 15	AB6	B	563	568	Right-handed alpha
Helix 16	AB7	B	571	579	Right-handed alpha
Helix 17	AB8	B	589	594	Right-handed alpha
Helix 18	AB9	B	595	597	Right-handed 310
Helix 19	AC1	B	608	620	Right-handed alpha
Helix 20	AC2	B	659	671	Right-handed alpha
Helix 21	AC3	B	682	689	Right-handed alpha
Helix 22	AC4	B	695	716	Right-handed alpha
Helix 23	AC5	C	219	231	Right-handed alpha
Helix 24	AC6	C	231	236	Right-handed alpha
Helix 25	AC7	C	293	304	Right-handed alpha
Helix 26	AC8	C	330	343	Right-handed alpha
Helix 27	AC9	C	364	369	Right-handed 310
Helix 28	AD1	C	387	394	Right-handed alpha
Helix 29	AD2	C	405	412	Right-handed alpha
Helix 30	AD3	C	419	436	Right-handed alpha
Helix 31	AD4	C	460	466	Right-handed alpha
Helix 32	AD5	C	492	509	Right-handed alpha
Helix 33	AD6	C	509	517	Right-handed alpha
Helix 34	AD7	C	537	542	Right-handed alpha
Helix 35	AD8	C	563	579	Right-handed alpha
Helix 36	AD9	C	608	619	Right-handed alpha
Helix 37	AE1	C	661	672	Right-handed alpha
Helix 38	AE2	C	682	688	Right-handed alpha
Helix 39	AE3	C	695	711	Right-handed alpha
Helix 40	AE4	C	754	760	Right-handed alpha
Helix 41	AE5	C	770	779	Right-handed alpha
Helix 42	AE6	D	220	231	Right-handed alpha
Helix 43	AE7	D	231	236	Right-handed alpha
Helix 44	AE8	D	263	268	Right-handed alpha
Helix 45	AE9	D	281	285	Right-handed 310
Helix 46	AF1	D	293	302	Right-handed alpha
Helix 47	AF2	D	328	341	Right-handed alpha
Helix 48	AF3	D	364	368	Right-handed 310
Helix 49	AF4	D	387	392	Right-handed alpha
Helix 50	AF5	D	407	412	Right-handed 310
Helix 51	AF6	D	418	436	Right-handed alpha
Helix 52	AF7	D	458	467	Right-handed alpha
Helix 53	AF8	D	471	475	Right-handed 310
Helix 54	AF9	D	492	504	Right-handed alpha
Helix 55	AG1	D	504	509	Right-handed alpha
Helix 56	AG2	D	510	517	Right-handed alpha
Helix 57	AG3	D	535	545	Right-handed alpha
Helix 58	AG4	D	569	580	Right-handed alpha
Helix 59	AG5	D	588	594	Right-handed alpha
Helix 60	AG6	D	608	619	Right-handed alpha
Helix 61	AG7	D	635	639	Right-handed 310
Helix 62	AG8	D	661	671	Right-handed alpha
Helix 63	AG9	D	682	689	Right-handed alpha
Helix 64	AH1	D	693	698	Right-handed alpha
Helix 65	AH2	D	701	708	Right-handed alpha
Helix 66	AH3	D	712	716	Right-handed 310
Helix 67	AH4	D	770	778	Right-handed alpha
Helix 68	AH5	E	220	228	Right-handed alpha
Helix 69	AH6	E	230	236	Right-handed alpha
Helix 70	AH7	E	261	273	Right-handed alpha
Helix 71	AH8	E	296	303	Right-handed alpha
Helix 72	AH9	E	328	343	Right-handed alpha
Helix 73	AI1	E	364	368	Right-handed 310
Helix 74	AI2	E	387	395	Right-handed alpha
Helix 75	AI3	E	405	413	Right-handed alpha
Helix 76	AI4	E	419	436	Right-handed alpha
Helix 77	AI5	E	458	468	Right-handed alpha
Helix 78	AI6	E	492	503	Right-handed alpha
Helix 79	AI7	E	509	517	Right-handed alpha
Helix 80	AI8	E	533	545	Right-handed alpha
Helix 81	AI9	E	563	579	Right-handed alpha
Helix 82	AJ1	E	588	592	Right-handed 310
Helix 83	AJ2	E	608	617	Right-handed alpha
Helix 84	AJ3	E	659	668	Right-handed alpha
Helix 85	AJ4	G	117	125	Right-handed alpha
Helix 86	AJ5	G	155	160	Right-handed alpha
Helix 87	AJ6	G	169	176	Right-handed alpha
Helix 88	AJ7	G	216	220	Right-handed 310
Helix 89	AJ8	G	241	256	Right-handed alpha
Helix 90	AJ9	G	300	313	Right-handed alpha
Helix 91	AK1	G	351	364	Right-handed alpha
Helix 92	AK2	G	500	508	Right-handed alpha
Helix 93	AK3	G	517	525	Right-handed alpha
Helix 94	AK4	G	526	536	Right-handed alpha
Helix 95	AK5	G	540	550	Right-handed alpha
Helix 96	AK6	G	556	565	Right-handed alpha
Helix 97	AK7	G	566	579	Right-handed alpha
Helix 98	AK8	H	24	30	Right-handed alpha

There are 11 sheets in PDB entry 6OAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	311	314	parallel
Strand 3	B	355	356	parallel
Strand 4	B	252	254	parallel
Strand 5	B	377	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	552	first strand
Strand 2	B	583	587	parallel
Strand 3	B	628	632	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	352	356	parallel
Strand 3	C	309	314	parallel
Strand 4	C	275	279	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	553	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	632	parallel
Strand 4	C	524	526	parallel
Strand 5	C	651	653	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	353	356	parallel
Strand 3	D	250	254	parallel
Strand 4	D	377	378	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	526	first strand
Strand 2	D	629	632	parallel
Strand 3	D	582	587	parallel
Strand 4	D	548	552	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	353	357	parallel
Strand 3	E	250	254	parallel
Strand 4	E	375	378	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	276	first strand
Strand 2	E	309	310	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	551	first strand
Strand 2	E	582	586	parallel
Strand 3	E	627	633	parallel
Strand 4	E	523	527	parallel
Strand 5	E	651	652	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	238	first strand
Strand 2	G	276	285	parallel
Strand 3	G	260	270	anti-parallel
Strand 4	G	320	327	anti-parallel
Strand 5	G	382	386	parallel
Strand 6	G	396	401	anti-parallel
Strand 7	G	463	465	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	414	415	first strand
Strand 2	G	424	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OAA