Analysis of interatomic Contacts of Structural Units in PDB entry:
6OAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OAP entry

There are 2 chains in PDB entry 6OAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ALA 308
B
 GLN 3ALA 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6OAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
93 103Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
115 155Right-handed alpha
Helix 7
AA7
A
158 175Right-handed alpha
Helix 8
AA8
A
215 219Right-handed alpha
Helix 9
AA9
A
219 224Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
239 249Right-handed alpha
Helix 12
AB3
A
281 308Right-handed alpha
Helix 13
AB4
B
14 27Right-handed alpha
Helix 14
AB5
B
40 52Right-handed alpha
Helix 15
AB6
B
66 74Right-handed alpha
Helix 16
AB7
B
93 103Right-handed alpha
Helix 17
AB8
B
112 114Right-handed 310
Helix 18
AB9
B
115 156Right-handed alpha
Helix 19
AC1
B
158 175Right-handed alpha
Helix 20
AC2
B
212 218Right-handed alpha
Helix 21
AC3
B
219 224Right-handed alpha
Helix 22
AC4
B
239 249Right-handed alpha
Helix 23
AC5
B
281 307Right-handed alpha
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There are 4 sheets in PDB entry 6OAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
6 11parallel
Strand 3
A
55 59parallel
Strand 4
A
85 89parallel
Strand 5
A
107 110parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 197first strand
Strand 2
A
178 184anti-parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
253 261anti-parallel
Strand 5
A
228 230anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 38first strand
Strand 2
B
4 11parallel
Strand 3
B
55 59parallel
Strand 4
B
85 89parallel
Strand 5
B
107 110parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 197first strand
Strand 2
B
178 184anti-parallel
Strand 3
B
264 273anti-parallel
Strand 4
B
253 261anti-parallel
Strand 5
B
228 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il