Analysis of interatomic Contacts of Structural Units in PDB entry:
6OAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OAR entry

There are 8 chains in PDB entry 6OAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	ASN 159
B	ALA 80	GLY 156
C	ASP 2	ILE 158
D	ALA 80	GLY 156
E	ASP 2	ILE 158
F	ALA 80	GLY 156
G	ASP 2	ASN 159
H	ALA 80	GLY 156

There are 44 helices in PDB entry 6OAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	24	27	Right-handed 310
Helix 3	AA3	A	39	50	Right-handed alpha
Helix 4	AA4	A	57	73	Right-handed alpha
Helix 5	AA5	A	74	80	Right-handed 310
Helix 6	AA6	A	85	94	Right-handed alpha
Helix 7	AA7	A	102	113	Right-handed alpha
Helix 8	AA8	A	137	141	Right-handed 310
Helix 9	AA9	B	103	116	Right-handed alpha
Helix 10	AB1	B	118	120	Right-handed 310
Helix 11	AB2	B	136	141	Right-handed 310
Helix 12	AB3	C	3	7	Right-handed 310
Helix 13	AB4	C	24	27	Right-handed 310
Helix 14	AB5	C	39	50	Right-handed alpha
Helix 15	AB6	C	57	73	Right-handed alpha
Helix 16	AB7	C	74	76	Right-handed 310
Helix 17	AB8	C	85	94	Right-handed alpha
Helix 18	AB9	C	102	113	Right-handed alpha
Helix 19	AC1	C	137	141	Right-handed 310
Helix 20	AC2	D	103	116	Right-handed alpha
Helix 21	AC3	D	118	120	Right-handed 310
Helix 22	AC4	D	136	141	Right-handed 310
Helix 23	AC5	E	3	7	Right-handed 310
Helix 24	AC6	E	24	27	Right-handed 310
Helix 25	AC7	E	39	50	Right-handed alpha
Helix 26	AC8	E	57	73	Right-handed alpha
Helix 27	AC9	E	74	80	Right-handed 310
Helix 28	AD1	E	85	94	Right-handed alpha
Helix 29	AD2	E	102	113	Right-handed alpha
Helix 30	AD3	E	137	141	Right-handed 310
Helix 31	AD4	F	103	116	Right-handed alpha
Helix 32	AD5	F	118	120	Right-handed 310
Helix 33	AD6	F	136	141	Right-handed 310
Helix 34	AD7	G	3	7	Right-handed 310
Helix 35	AD8	G	24	27	Right-handed 310
Helix 36	AD9	G	39	50	Right-handed alpha
Helix 37	AE1	G	57	73	Right-handed alpha
Helix 38	AE2	G	74	80	Right-handed 310
Helix 39	AE3	G	85	94	Right-handed alpha
Helix 40	AE4	G	102	113	Right-handed alpha
Helix 41	AE5	G	137	141	Right-handed 310
Helix 42	AE6	H	103	116	Right-handed alpha
Helix 43	AE7	H	118	120	Right-handed 310
Helix 44	AE8	H	136	141	Right-handed 310

There are 12 sheets in PDB entry 6OAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	A	127	133	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	142	147	parallel
Strand 6	A	151	157	anti-parallel
Strand 7	A	29	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	B	155	156	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	122	126	anti-parallel
Strand 5	B	129	130	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	127	133	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	142	147	parallel
Strand 6	C	151	157	anti-parallel
Strand 7	C	29	32	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	D	155	156	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	99	first strand
Strand 2	D	81	87	anti-parallel
Strand 3	D	147	152	parallel
Strand 4	D	122	126	anti-parallel
Strand 5	D	129	130	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	16	19	anti-parallel
Strand 3	E	127	133	anti-parallel
Strand 4	E	116	121	anti-parallel
Strand 5	E	142	147	parallel
Strand 6	E	151	157	anti-parallel
Strand 7	E	29	32	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	F	155	156	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	99	first strand
Strand 2	F	81	87	anti-parallel
Strand 3	F	147	152	parallel
Strand 4	F	122	126	anti-parallel
Strand 5	F	129	130	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	16	19	anti-parallel
Strand 3	G	127	133	anti-parallel
Strand 4	G	116	121	anti-parallel
Strand 5	G	142	147	parallel
Strand 6	G	151	157	anti-parallel
Strand 7	G	29	32	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	101	first strand
Strand 2	H	155	156	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	98	first strand
Strand 2	H	82	87	anti-parallel
Strand 3	H	147	152	parallel
Strand 4	H	122	126	anti-parallel
Strand 5	H	129	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OAR