Analysis of interatomic Contacts of Structural Units in PDB entry:
6OB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OB0 entry

There are 8 chains in PDB entry 6OB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 30	ASN 471
B	GLN 30	ASN 471
C	GLN 30	ASN 471
D	GLN 30	ASN 471
E	VAL 61	SER 143
F	LEU 63	SER 143
G	LEU 63	SER 143
H	LEU 63	SER 143

There are 56 helices in PDB entry 6OB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	61	68	Right-handed alpha
Helix 3	AA3	A	90	103	Right-handed alpha
Helix 4	AA4	A	113	118	Right-handed alpha
Helix 5	AA5	A	120	147	Right-handed alpha
Helix 6	AA6	A	149	151	Right-handed 310
Helix 7	AA7	A	160	172	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	199	203	Right-handed 310
Helix 10	AB1	A	246	254	Right-handed alpha
Helix 11	AB2	A	259	265	Right-handed alpha
Helix 12	AB3	A	265	281	Right-handed alpha
Helix 13	AB4	A	293	298	Right-handed alpha
Helix 14	AB5	A	305	308	Right-handed 310
Helix 15	AB6	B	30	34	Right-handed 310
Helix 16	AB7	B	60	68	Right-handed alpha
Helix 17	AB8	B	90	103	Right-handed alpha
Helix 18	AB9	B	113	118	Right-handed alpha
Helix 19	AC1	B	120	147	Right-handed alpha
Helix 20	AC2	B	149	151	Right-handed 310
Helix 21	AC3	B	160	172	Right-handed alpha
Helix 22	AC4	B	193	197	Right-handed 310
Helix 23	AC5	B	199	203	Right-handed 310
Helix 24	AC6	B	246	254	Right-handed alpha
Helix 25	AC7	B	259	265	Right-handed alpha
Helix 26	AC8	B	265	281	Right-handed alpha
Helix 27	AC9	B	293	299	Right-handed alpha
Helix 28	AD1	C	30	34	Right-handed 310
Helix 29	AD2	C	61	68	Right-handed alpha
Helix 30	AD3	C	90	103	Right-handed alpha
Helix 31	AD4	C	113	118	Right-handed alpha
Helix 32	AD5	C	120	147	Right-handed alpha
Helix 33	AD6	C	149	151	Right-handed 310
Helix 34	AD7	C	160	172	Right-handed alpha
Helix 35	AD8	C	193	197	Right-handed 310
Helix 36	AD9	C	199	203	Right-handed 310
Helix 37	AE1	C	246	254	Right-handed alpha
Helix 38	AE2	C	259	265	Right-handed alpha
Helix 39	AE3	C	265	281	Right-handed alpha
Helix 40	AE4	C	293	299	Right-handed alpha
Helix 41	AE5	C	305	308	Right-handed 310
Helix 42	AE6	D	30	34	Right-handed 310
Helix 43	AE7	D	61	68	Right-handed alpha
Helix 44	AE8	D	90	103	Right-handed alpha
Helix 45	AE9	D	115	119	Right-handed 310
Helix 46	AF1	D	120	127	Right-handed alpha
Helix 47	AF2	D	127	147	Right-handed alpha
Helix 48	AF3	D	149	151	Right-handed 310
Helix 49	AF4	D	159	172	Right-handed alpha
Helix 50	AF5	D	193	197	Right-handed 310
Helix 51	AF6	D	199	203	Right-handed 310
Helix 52	AF7	D	246	254	Right-handed alpha
Helix 53	AF8	D	259	265	Right-handed alpha
Helix 54	AF9	D	265	281	Right-handed alpha
Helix 55	AG1	D	293	299	Right-handed alpha
Helix 56	AG2	E	139	143	Right-handed 310

There are 20 sheets in PDB entry 6OB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	75	79	parallel
Strand 4	A	153	158	parallel
Strand 5	A	178	182	parallel
Strand 6	A	205	209	parallel
Strand 7	A	230	234	parallel
Strand 8	A	326	330	parallel
Strand 9	A	287	290	anti-parallel
Strand 10	A	310	312	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	384	first strand
Strand 2	A	356	368	anti-parallel
Strand 3	A	402	409	anti-parallel
Strand 4	A	460	469	anti-parallel
Strand 5	A	440	446	anti-parallel
Strand 6	A	430	435	anti-parallel
Strand 7	A	341	349	anti-parallel
Strand 8	A	387	395	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	451	454	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	75	79	parallel
Strand 4	B	153	159	parallel
Strand 5	B	178	184	parallel
Strand 6	B	205	209	parallel
Strand 7	B	230	234	parallel
Strand 8	B	326	330	parallel
Strand 9	B	287	290	anti-parallel
Strand 10	B	310	312	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	384	first strand
Strand 2	B	356	368	anti-parallel
Strand 3	B	402	409	anti-parallel
Strand 4	B	460	469	anti-parallel
Strand 5	B	440	446	anti-parallel
Strand 6	B	430	435	anti-parallel
Strand 7	B	341	349	anti-parallel
Strand 8	B	387	395	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	451	454	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	75	79	parallel
Strand 4	C	153	158	parallel
Strand 5	C	178	182	parallel
Strand 6	C	205	209	parallel
Strand 7	C	230	234	parallel
Strand 8	C	326	330	parallel
Strand 9	C	287	290	anti-parallel
Strand 10	C	310	312	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	384	first strand
Strand 2	C	356	368	anti-parallel
Strand 3	C	402	409	anti-parallel
Strand 4	C	460	469	anti-parallel
Strand 5	C	440	446	anti-parallel
Strand 6	C	430	435	anti-parallel
Strand 7	C	341	349	anti-parallel
Strand 8	C	387	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	428	first strand
Strand 2	C	451	454	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	75	79	parallel
Strand 4	D	153	158	parallel
Strand 5	D	178	182	parallel
Strand 6	D	205	209	parallel
Strand 7	D	230	234	parallel
Strand 8	D	326	330	parallel
Strand 9	D	287	290	anti-parallel
Strand 10	D	310	312	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	384	first strand
Strand 2	D	356	368	anti-parallel
Strand 3	D	402	409	anti-parallel
Strand 4	D	460	469	anti-parallel
Strand 5	D	440	446	anti-parallel
Strand 6	D	430	435	anti-parallel
Strand 7	D	341	349	anti-parallel
Strand 8	D	387	395	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	428	first strand
Strand 2	D	451	454	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	80	82	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	72	first strand
Strand 2	E	101	111	anti-parallel
Strand 3	E	88	98	anti-parallel
Strand 4	E	124	131	anti-parallel
Strand 5	E	117	121	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	80	82	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	101	111	anti-parallel
Strand 3	F	88	98	anti-parallel
Strand 4	F	124	131	anti-parallel
Strand 5	F	117	120	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	80	82	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	72	first strand
Strand 2	G	101	111	anti-parallel
Strand 3	G	88	98	anti-parallel
Strand 4	G	125	131	anti-parallel
Strand 5	G	117	120	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	66	first strand
Strand 2	H	80	82	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	72	first strand
Strand 2	H	101	111	anti-parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	124	131	anti-parallel
Strand 5	H	117	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OB0