Analysis of interatomic Contacts of Structural Units in PDB entry:
6OB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OB5 entry

There are 4 chains in PDB entry 6OB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 4	LYS 370
A	LEU 7	LYS 370
C	SER 12	LEU 165
D	SER 12	LEU 165

There are 54 helices in PDB entry 6OB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	16	32	Right-handed alpha
Helix 2	AA2	B	42	51	Right-handed alpha
Helix 3	AA3	B	66	73	Right-handed alpha
Helix 4	AA4	B	82	87	Right-handed alpha
Helix 5	AA5	B	90	97	Right-handed alpha
Helix 6	AA6	B	128	141	Right-handed alpha
Helix 7	AA7	B	153	162	Right-handed alpha
Helix 8	AA8	B	185	201	Right-handed alpha
Helix 9	AA9	B	209	219	Right-handed alpha
Helix 10	AB1	B	228	230	Right-handed 310
Helix 11	AB2	B	231	237	Right-handed alpha
Helix 12	AB3	B	272	283	Right-handed alpha
Helix 13	AB4	B	286	297	Right-handed alpha
Helix 14	AB5	B	304	312	Right-handed alpha
Helix 15	AB6	B	314	327	Right-handed alpha
Helix 16	AB7	B	334	352	Right-handed alpha
Helix 17	AB8	B	356	370	Right-handed alpha
Helix 18	AB9	A	16	29	Right-handed alpha
Helix 19	AC1	A	42	51	Right-handed alpha
Helix 20	AC2	A	66	73	Right-handed alpha
Helix 21	AC3	A	82	87	Right-handed alpha
Helix 22	AC4	A	90	97	Right-handed alpha
Helix 23	AC5	A	130	141	Right-handed alpha
Helix 24	AC6	A	153	162	Right-handed alpha
Helix 25	AC7	A	185	201	Right-handed alpha
Helix 26	AC8	A	209	219	Right-handed alpha
Helix 27	AC9	A	228	230	Right-handed 310
Helix 28	AD1	A	231	237	Right-handed alpha
Helix 29	AD2	A	272	283	Right-handed alpha
Helix 30	AD3	A	286	297	Right-handed alpha
Helix 31	AD4	A	304	312	Right-handed alpha
Helix 32	AD5	A	314	327	Right-handed alpha
Helix 33	AD6	A	334	352	Right-handed alpha
Helix 34	AD7	A	356	370	Right-handed alpha
Helix 35	AD8	C	13	25	Right-handed alpha
Helix 36	AD9	C	26	36	Right-handed alpha
Helix 37	AE1	C	49	58	Right-handed alpha
Helix 38	AE2	C	59	69	Right-handed alpha
Helix 39	AE3	C	82	90	Right-handed alpha
Helix 40	AE4	C	92	103	Right-handed alpha
Helix 41	AE5	C	115	123	Right-handed alpha
Helix 42	AE6	C	125	135	Right-handed alpha
Helix 43	AE7	C	148	156	Right-handed alpha
Helix 44	AE8	C	158	165	Right-handed alpha
Helix 45	AE9	D	13	25	Right-handed alpha
Helix 46	AF1	D	26	36	Right-handed alpha
Helix 47	AF2	D	49	58	Right-handed alpha
Helix 48	AF3	D	59	69	Right-handed alpha
Helix 49	AF4	D	82	90	Right-handed alpha
Helix 50	AF5	D	92	103	Right-handed alpha
Helix 51	AF6	D	115	123	Right-handed alpha
Helix 52	AF7	D	125	135	Right-handed alpha
Helix 53	AF8	D	148	156	Right-handed alpha
Helix 54	AF9	D	158	165	Right-handed alpha

There are 10 sheets in PDB entry 6OB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	175	177	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	8	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	8	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	175	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OB5