Analysis of interatomic Contacts of Structural Units in PDB entry:
6OBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OBJ entry

There are 4 chains in PDB entry 6OBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLY 339
C
 G 1 C 26
B
 PRO 2GLY 339
D
 G 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6OBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
69 83Right-handed alpha
Helix 6
AA6
A
92 122Right-handed alpha
Helix 7
AA7
A
140 143Right-handed 310
Helix 8
AA8
A
156 160Right-handed 310
Helix 9
AA9
A
161 176Right-handed alpha
Helix 10
AB1
A
177 179Right-handed 310
Helix 11
AB2
A
195 199Right-handed 310
Helix 12
AB3
A
201 205Right-handed 310
Helix 13
AB4
A
213 218Right-handed alpha
Helix 14
AB5
A
223 227Right-handed 310
Helix 15
AB6
A
231 233Right-handed 310
Helix 16
AB7
A
253 264Right-handed alpha
Helix 17
AB8
A
286 291Right-handed alpha
Helix 18
AB9
A
319 334Right-handed alpha
Helix 19
AC1
A
335 337Right-handed 310
Helix 20
AC2
B
8 13Right-handed alpha
Helix 21
AC3
B
38 47Right-handed alpha
Helix 22
AC4
B
56 61Right-handed alpha
Helix 23
AC5
B
63 68Right-handed alpha
Helix 24
AC6
B
69 83Right-handed alpha
Helix 25
AC7
B
92 122Right-handed alpha
Helix 26
AC8
B
140 143Right-handed 310
Helix 27
AC9
B
156 160Right-handed 310
Helix 28
AD1
B
161 176Right-handed alpha
Helix 29
AD2
B
177 179Right-handed 310
Helix 30
AD3
B
195 199Right-handed 310
Helix 31
AD4
B
201 205Right-handed 310
Helix 32
AD5
B
213 218Right-handed alpha
Helix 33
AD6
B
223 227Right-handed 310
Helix 34
AD7
B
231 233Right-handed 310
Helix 35
AD8
B
253 264Right-handed alpha
Helix 36
AD9
B
286 291Right-handed alpha
Helix 37
AE1
B
319 334Right-handed alpha
Helix 38
AE2
B
335 337Right-handed 310
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There are 4 sheets in PDB entry 6OBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
35 37anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
189 193anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
274 278parallel
Strand 5
A
313 314parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
35 37anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
235 241anti-parallel
Strand 4
B
274 278parallel
Strand 5
B
313 314parallel
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