Analysis of interatomic Contacts of Structural Units in PDB entry:
6OBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OBN entry

There are 4 chains in PDB entry 6OBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 298
B
 LEU 7LYS 297
C
 ARG 76PHE 360
D
 ARG 76VAL 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6OBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
31 48Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
99 114Right-handed alpha
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
145 157Right-handed alpha
Helix 7
AA7
A
182 188Right-handed alpha
Helix 8
AA8
A
199 207Right-handed alpha
Helix 9
AA9
A
228 239Right-handed alpha
Helix 10
AB1
B
8 18Right-handed alpha
Helix 11
AB2
B
31 48Right-handed alpha
Helix 12
AB3
B
68 80Right-handed alpha
Helix 13
AB4
B
99 114Right-handed alpha
Helix 14
AB5
B
134 144Right-handed alpha
Helix 15
AB6
B
145 157Right-handed alpha
Helix 16
AB7
B
182 188Right-handed alpha
Helix 17
AB8
B
199 207Right-handed alpha
Helix 18
AB9
B
230 240Right-handed alpha
Helix 19
AC1
C
93 97Right-handed 310
Helix 20
AC2
C
310 318Right-handed 310
Helix 21
AC3
C
331 336Right-handed 310
Helix 22
AC4
C
338 347Right-handed alpha
Helix 23
AC5
D
93 97Right-handed 310
Helix 24
AC6
D
310 318Right-handed 310
Helix 25
AC7
D
331 336Right-handed 310
Helix 26
AC8
D
338 347Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6OBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
162 165parallel
Strand 3
A
169 172anti-parallel
Strand 4
A
243 246parallel
Strand 5
A
263 266parallel
Strand 6
A
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
87 89parallel
Strand 3
A
59 62parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
291 296anti-parallel
Strand 6
B
291 296anti-parallel
Strand 7
B
280 285anti-parallel
Strand 8
B
59 62anti-parallel
Strand 9
B
87 89parallel
Strand 10
B
118 120parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
225 227parallel
Strand 3
A
216 218anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
162 165parallel
Strand 3
B
169 171anti-parallel
Strand 4
B
243 246parallel
Strand 5
B
263 266parallel
Strand 6
B
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
225 227parallel
Strand 3
B
216 218anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
102 104parallel
Strand 3
C
124 126parallel
Strand 4
C
146 148parallel
Strand 5
C
168 170parallel
Strand 6
C
190 192parallel
Strand 7
C
212 214parallel
Strand 8
C
234 236parallel
Strand 9
C
256 258parallel
Strand 10
C
278 280parallel
Strand 11
C
300 302parallel
Strand 12
C
325 327parallel
Strand 13
C
352 353parallel
Strand 14
C
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 82first strand
Strand 2
D
102 104parallel
Strand 3
D
124 126parallel
Strand 4
D
146 148parallel
Strand 5
D
168 170parallel
Strand 6
D
190 192parallel
Strand 7
D
212 214parallel
Strand 8
D
234 236parallel
Strand 9
D
256 258parallel
Strand 10
D
278 280parallel
Strand 11
D
300 302parallel
Strand 12
D
325 327parallel
Strand 13
D
352 353parallel
Strand 14
D
356 357anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il