Analysis of interatomic Contacts of Structural Units in PDB entry:
6OBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OBY entry

There are 2 chains in PDB entry 6OBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4HIS 258
B
 ARG 4HIS 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6OBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
31 46Right-handed alpha
Helix 3
AA3
A
60 66Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
166 179Right-handed alpha
Helix 8
AA8
A
209 219Right-handed alpha
Helix 9
AA9
A
229 239Right-handed alpha
Helix 10
AB1
A
240 244Right-handed 310
Helix 11
AB2
B
6 15Right-handed alpha
Helix 12
AB3
B
31 46Right-handed alpha
Helix 13
AB4
B
60 66Right-handed alpha
Helix 14
AB5
B
96 98Right-handed 310
Helix 15
AB6
B
113 123Right-handed alpha
Helix 16
AB7
B
142 152Right-handed alpha
Helix 17
AB8
B
166 179Right-handed alpha
Helix 18
AB9
B
209 219Right-handed alpha
Helix 19
AC1
B
229 239Right-handed alpha
Helix 20
AC2
B
240 244Right-handed 310
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There are 6 sheets in PDB entry 6OBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
91 94anti-parallel
Strand 3
A
50 54parallel
Strand 4
A
129 135parallel
Strand 5
A
17 25parallel
Strand 6
A
155 160parallel
Strand 7
A
183 190parallel
Strand 8
A
222 226parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
79 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
202 204anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
91 94anti-parallel
Strand 3
B
50 54parallel
Strand 4
B
129 135parallel
Strand 5
B
17 25parallel
Strand 6
B
155 160parallel
Strand 7
B
183 190parallel
Strand 8
B
222 226parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
79 81anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
202 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il