Analysis of interatomic Contacts of Structural Units in PDB entry:
6OC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OC1 entry

There is 1 chain in PDB entry 6OC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31HIS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6OC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
50 65Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
103 111Right-handed alpha
Helix 6
AA6
A
137 139Right-handed 310
Helix 7
AA7
A
152 162Right-handed alpha
Helix 8
AA8
A
163 173Right-handed alpha
Helix 9
AA9
A
189 202Right-handed alpha
Helix 10
AB1
A
219 224Right-handed 310
Helix 11
AB2
A
225 241Right-handed alpha
Helix 12
AB3
A
244 248Right-handed 310
Helix 13
AB4
A
260 275Right-handed alpha
Helix 14
AB5
A
308 324Right-handed alpha
Helix 15
AB6
A
337 347Right-handed alpha
Helix 16
AB7
A
357 362Right-handed alpha
Helix 17
AB8
A
364 380Right-handed alpha
Helix 18
AB9
A
385 389Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6OC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
349 354parallel
Strand 3
A
329 332parallel
Strand 4
A
278 281parallel
Strand 5
A
250 255parallel
Strand 6
A
207 211parallel
Strand 7
A
177 181parallel
Strand 8
A
115 120parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
302 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il