Analysis of interatomic Contacts of Structural Units in PDB entry:
6OC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OC5 entry

There are 2 chains in PDB entry 6OC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 22	ASN 600
B	ASN 22	ASN 600

There are 25 helices in PDB entry 6OC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	31	Right-handed alpha
Helix 2	AA2	A	57	61	Right-handed 310
Helix 3	AA3	A	116	120	Right-handed 310
Helix 4	AA4	A	166	170	Right-handed 310
Helix 5	AA5	A	190	194	Right-handed 310
Helix 6	AA6	A	218	223	Right-handed alpha
Helix 7	AA7	A	241	245	Right-handed 310
Helix 8	AA8	A	394	399	Right-handed alpha
Helix 9	AA9	A	560	565	Right-handed alpha
Helix 10	AB1	A	572	574	Right-handed 310
Helix 11	AB2	A	575	580	Right-handed alpha
Helix 12	AB3	A	581	586	Right-handed 310
Helix 13	AB4	B	23	31	Right-handed alpha
Helix 14	AB5	B	57	61	Right-handed 310
Helix 15	AB6	B	116	120	Right-handed 310
Helix 16	AB7	B	166	170	Right-handed 310
Helix 17	AB8	B	190	194	Right-handed 310
Helix 18	AB9	B	218	223	Right-handed alpha
Helix 19	AC1	B	241	245	Right-handed 310
Helix 20	AC2	B	281	285	Right-handed 310
Helix 21	AC3	B	394	399	Right-handed alpha
Helix 22	AC4	B	560	565	Right-handed alpha
Helix 23	AC5	B	572	574	Right-handed 310
Helix 24	AC6	B	575	580	Right-handed alpha
Helix 25	AC7	B	581	586	Right-handed 310

There are 21 sheets in PDB entry 6OC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	498	500	parallel
Strand 3	A	504	508	anti-parallel
Strand 4	A	513	518	anti-parallel
Strand 5	A	524	529	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	592	597	anti-parallel
Strand 3	A	546	552	anti-parallel
Strand 4	A	539	543	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	85	89	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	107	111	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	138	142	anti-parallel
Strand 3	A	147	152	anti-parallel
Strand 4	A	158	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	198	203	anti-parallel
Strand 4	A	209	214	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	230	231	anti-parallel
Strand 3	A	305	310	parallel
Strand 4	A	294	298	anti-parallel
Strand 5	A	269	273	anti-parallel
Strand 6	A	262	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	332	first strand
Strand 2	A	335	343	anti-parallel
Strand 3	A	348	353	anti-parallel
Strand 4	A	359	364	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	387	389	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	436	442	anti-parallel
Strand 3	A	456	462	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	428	434	anti-parallel
Strand 3	A	471	477	anti-parallel
Strand 4	A	482	489	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	498	500	parallel
Strand 3	B	504	508	anti-parallel
Strand 4	B	513	518	anti-parallel
Strand 5	B	524	529	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	592	597	anti-parallel
Strand 3	B	546	552	anti-parallel
Strand 4	B	539	543	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	106	111	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	147	152	anti-parallel
Strand 4	B	158	163	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	209	214	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	234	235	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	269	273	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	305	310	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	332	first strand
Strand 2	B	335	343	anti-parallel
Strand 3	B	348	353	anti-parallel
Strand 4	B	359	364	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	387	389	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	436	442	anti-parallel
Strand 3	B	456	462	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	471	477	anti-parallel
Strand 4	B	482	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OC5