Analysis of interatomic Contacts of Structural Units in PDB entry:
6OCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OCE entry

There are 2 chains in PDB entry 6OCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 712
B
 THR 3VAL 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6OCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
9 28Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
38 42Right-handed 310
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
78 82Right-handed 310
Helix 7
AA7
A
83 89Right-handed alpha
Helix 8
AA8
A
97 101Right-handed 310
Helix 9
AA9
A
102 127Right-handed alpha
Helix 10
AB1
A
154 189Right-handed alpha
Helix 11
AB2
A
194 199Right-handed alpha
Helix 12
AB3
A
214 224Right-handed alpha
Helix 13
AB4
A
237 269Right-handed alpha
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
296 309Right-handed alpha
Helix 16
AB7
A
325 331Right-handed alpha
Helix 17
AB8
A
363 385Right-handed alpha
Helix 18
AB9
A
386 393Right-handed alpha
Helix 19
AC1
A
416 421Right-handed alpha
Helix 20
AC2
A
424 433Right-handed alpha
Helix 21
AC3
A
436 449Right-handed alpha
Helix 22
AC4
A
452 473Right-handed alpha
Helix 23
AC5
A
473 486Right-handed alpha
Helix 24
AC6
A
508 520Right-handed alpha
Helix 25
AC7
A
521 529Right-handed alpha
Helix 26
AC8
A
532 542Right-handed alpha
Helix 27
AC9
A
549 554Right-handed alpha
Helix 28
AD1
A
561 583Right-handed alpha
Helix 29
AD2
A
587 607Right-handed alpha
Helix 30
AD3
A
619 639Right-handed alpha
Helix 31
AD4
A
650 672Right-handed alpha
Helix 32
AD5
A
673 678Right-handed alpha
Helix 33
AD6
A
681 695Right-handed alpha
Helix 34
AD7
A
701 706Right-handed alpha
Helix 35
AD8
B
4 9Right-handed alpha
Helix 36
AD9
B
9 28Right-handed alpha
Helix 37
AE1
B
33 37Right-handed 310
Helix 38
AE2
B
38 42Right-handed 310
Helix 39
AE3
B
71 74Right-handed 310
Helix 40
AE4
B
75 80Right-handed alpha
Helix 41
AE5
B
83 89Right-handed alpha
Helix 42
AE6
B
97 101Right-handed 310
Helix 43
AE7
B
102 127Right-handed alpha
Helix 44
AE8
B
154 189Right-handed alpha
Helix 45
AE9
B
194 199Right-handed alpha
Helix 46
AF1
B
217 224Right-handed alpha
Helix 47
AF2
B
237 260Right-handed alpha
Helix 48
AF3
B
264 269Right-handed alpha
Helix 49
AF4
B
287 292Right-handed alpha
Helix 50
AF5
B
295 309Right-handed alpha
Helix 51
AF6
B
325 331Right-handed alpha
Helix 52
AF7
B
363 385Right-handed alpha
Helix 53
AF8
B
386 393Right-handed alpha
Helix 54
AF9
B
416 421Right-handed alpha
Helix 55
AG1
B
424 433Right-handed alpha
Helix 56
AG2
B
436 449Right-handed alpha
Helix 57
AG3
B
452 473Right-handed alpha
Helix 58
AG4
B
473 486Right-handed alpha
Helix 59
AG5
B
508 520Right-handed alpha
Helix 60
AG6
B
521 529Right-handed alpha
Helix 61
AG7
B
530 542Right-handed alpha
Helix 62
AG8
B
549 554Right-handed alpha
Helix 63
AG9
B
561 583Right-handed alpha
Helix 64
AH1
B
587 607Right-handed alpha
Helix 65
AH2
B
619 639Right-handed alpha
Helix 66
AH3
B
641 645Right-handed 310
Helix 67
AH4
B
650 672Right-handed alpha
Helix 68
AH5
B
673 678Right-handed alpha
Helix 69
AH6
B
681 695Right-handed alpha
Helix 70
AH7
B
701 706Right-handed alpha
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There are 2 sheets in PDB entry 6OCE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
200 203anti-parallel
Strand 4
A
345 348anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
318 321anti-parallel
Strand 3
B
200 203anti-parallel
Strand 4
B
345 348anti-parallel
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