Analysis of interatomic Contacts of Structural Units in PDB entry:
6OD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OD1 entry

There are 2 chains in PDB entry 6OD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLU 337
B
 SER 19ALA 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6OD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
142 148Right-handed alpha
Helix 8
AA8
A
149 160Right-handed alpha
Helix 9
AA9
A
209 233Right-handed alpha
Helix 10
AB1
A
240 255Right-handed alpha
Helix 11
AB2
B
20 35Right-handed alpha
Helix 12
AB3
B
41 46Right-handed alpha
Helix 13
AB4
B
46 55Right-handed alpha
Helix 14
AB5
B
58 77Right-handed alpha
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There are 4 sheets in PDB entry 6OD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
9 13parallel
Strand 3
A
54 57parallel
Strand 4
A
82 86parallel
Strand 5
A
104 107parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
328 336anti-parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
283 287anti-parallel
Strand 6
A
292 295anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
197 204anti-parallel
Strand 3
A
263 269anti-parallel
Strand 4
A
274 280anti-parallel
Strand 5
A
312 315anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 87first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
121 123anti-parallel
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