Analysis of interatomic Contacts of Structural Units in PDB entry:
6OD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OD8 entry

There are 2 chains in PDB entry 6OD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 39PRO 550
B
 ALA 35PRO 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6OD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 47Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
119 129Right-handed alpha
Helix 5
AA5
A
176 182Right-handed alpha
Helix 6
AA6
A
192 199Right-handed alpha
Helix 7
AA7
A
199 204Right-handed alpha
Helix 8
AA8
A
206 230Right-handed alpha
Helix 9
AA9
A
267 276Right-handed alpha
Helix 10
AB1
A
316 335Right-handed alpha
Helix 11
AB2
A
337 346Right-handed alpha
Helix 12
AB3
A
358 366Right-handed alpha
Helix 13
AB4
A
371 373Right-handed 310
Helix 14
AB5
A
396 405Right-handed alpha
Helix 15
AB6
A
418 434Right-handed alpha
Helix 16
AB7
A
444 448Right-handed 310
Helix 17
AB8
A
483 494Right-handed alpha
Helix 18
AB9
A
498 500Right-handed 310
Helix 19
AC1
A
501 507Right-handed alpha
Helix 20
AC2
A
522 531Right-handed alpha
Helix 21
AC3
A
534 539Right-handed 310
Helix 22
AC4
B
36 46Right-handed alpha
Helix 23
AC5
B
67 71Right-handed 310
Helix 24
AC6
B
73 77Right-handed 310
Helix 25
AC7
B
119 129Right-handed alpha
Helix 26
AC8
B
176 181Right-handed alpha
Helix 27
AC9
B
192 199Right-handed alpha
Helix 28
AD1
B
199 204Right-handed alpha
Helix 29
AD2
B
206 230Right-handed alpha
Helix 30
AD3
B
267 276Right-handed alpha
Helix 31
AD4
B
316 335Right-handed alpha
Helix 32
AD5
B
337 346Right-handed alpha
Helix 33
AD6
B
358 366Right-handed alpha
Helix 34
AD7
B
371 373Right-handed 310
Helix 35
AD8
B
396 405Right-handed alpha
Helix 36
AD9
B
418 434Right-handed alpha
Helix 37
AE1
B
444 448Right-handed 310
Helix 38
AE2
B
483 494Right-handed alpha
Helix 39
AE3
B
498 500Right-handed 310
Helix 40
AE4
B
501 507Right-handed alpha
Helix 41
AE5
B
522 531Right-handed alpha
Helix 42
AE6
B
534 539Right-handed 310
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There are 6 sheets in PDB entry 6OD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
156 167parallel
Strand 3
A
134 143anti-parallel
Strand 4
A
80 92anti-parallel
Strand 5
A
96 103anti-parallel
Strand 6
A
106 113anti-parallel
Strand 7
A
156 167parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
281 289parallel
Strand 3
A
302 311anti-parallel
Strand 4
A
515 521anti-parallel
Strand 5
A
472 479anti-parallel
Strand 6
A
464 469anti-parallel
Strand 7
A
437 441anti-parallel
Strand 8
A
392 395parallel
Strand 9
A
383 384anti-parallel
Strand 10
A
368 369parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
259 263anti-parallel
Strand 3
A
253 256anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
156 167parallel
Strand 3
B
134 143anti-parallel
Strand 4
B
80 93anti-parallel
Strand 5
B
96 103anti-parallel
Strand 6
B
106 113anti-parallel
Strand 7
B
156 167parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
281 289parallel
Strand 3
B
302 311anti-parallel
Strand 4
B
515 521anti-parallel
Strand 5
B
472 479anti-parallel
Strand 6
B
464 469anti-parallel
Strand 7
B
437 441anti-parallel
Strand 8
B
392 395parallel
Strand 9
B
383 384anti-parallel
Strand 10
B
368 369parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
259 263anti-parallel
Strand 3
B
253 256anti-parallel
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