Analysis of interatomic Contacts of Structural Units in PDB entry:
6ODB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ODB entry

There are 3 chains in PDB entry 6ODB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13VAL 377
B
 LEU 14VAL 377
C
 LEU 14VAL 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6ODB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
49 54Right-handed 310
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
72 85Right-handed alpha
Helix 6
AA6
A
90 97Right-handed 310
Helix 7
AA7
A
107 128Right-handed alpha
Helix 8
AA8
A
156 167Right-handed alpha
Helix 9
AA9
A
182 190Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
236 256Right-handed alpha
Helix 12
AB3
A
280 293Right-handed alpha
Helix 13
AB4
A
307 324Right-handed alpha
Helix 14
AB5
A
336 341Right-handed 310
Helix 15
AB6
A
358 376Right-handed alpha
Helix 16
AB7
B
21 30Right-handed alpha
Helix 17
AB8
B
36 48Right-handed alpha
Helix 18
AB9
B
49 54Right-handed 310
Helix 19
AC1
B
63 68Right-handed alpha
Helix 20
AC2
B
72 85Right-handed alpha
Helix 21
AC3
B
90 97Right-handed 310
Helix 22
AC4
B
107 128Right-handed alpha
Helix 23
AC5
B
156 167Right-handed alpha
Helix 24
AC6
B
182 189Right-handed alpha
Helix 25
AC7
B
219 223Right-handed 310
Helix 26
AC8
B
236 256Right-handed alpha
Helix 27
AC9
B
280 293Right-handed alpha
Helix 28
AD1
B
307 324Right-handed alpha
Helix 29
AD2
B
336 341Right-handed 310
Helix 30
AD3
B
358 376Right-handed alpha
Helix 31
AD4
C
21 29Right-handed alpha
Helix 32
AD5
C
36 48Right-handed alpha
Helix 33
AD6
C
49 54Right-handed 310
Helix 34
AD7
C
63 68Right-handed alpha
Helix 35
AD8
C
72 85Right-handed alpha
Helix 36
AD9
C
107 128Right-handed alpha
Helix 37
AE1
C
156 167Right-handed alpha
Helix 38
AE2
C
182 190Right-handed alpha
Helix 39
AE3
C
219 223Right-handed 310
Helix 40
AE4
C
236 256Right-handed alpha
Helix 41
AE5
C
280 293Right-handed alpha
Helix 42
AE6
C
307 324Right-handed alpha
Helix 43
AE7
C
336 341Right-handed 310
Helix 44
AE8
C
358 376Right-handed alpha
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There are 3 sheets in PDB entry 6ODB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
17 19parallel
Strand 3
A
133 136parallel
Strand 4
A
297 301parallel
Strand 5
A
259 263parallel
Strand 6
A
172 176parallel
Strand 7
A
195 202parallel
Strand 8
A
226 231parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
17 19parallel
Strand 3
B
133 136parallel
Strand 4
B
297 301parallel
Strand 5
B
259 263parallel
Strand 6
B
172 176parallel
Strand 7
B
195 202parallel
Strand 8
B
226 231parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
17 19parallel
Strand 3
C
133 136parallel
Strand 4
C
297 301parallel
Strand 5
C
259 263parallel
Strand 6
C
172 176parallel
Strand 7
C
195 202parallel
Strand 8
C
226 231parallel
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