Analysis of interatomic Contacts of Structural Units in PDB entry:
6ODC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ODC entry

There are 3 chains in PDB entry 6ODC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14GLY 380
B
 SER 13ILE 378
C
 LEU 14VAL 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6ODC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
49 54Right-handed 310
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
72 85Right-handed alpha
Helix 6
AA6
A
90 97Right-handed 310
Helix 7
AA7
A
107 128Right-handed alpha
Helix 8
AA8
A
156 166Right-handed alpha
Helix 9
AA9
A
182 189Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
236 256Right-handed alpha
Helix 12
AB3
A
265 269Right-handed 310
Helix 13
AB4
A
280 293Right-handed alpha
Helix 14
AB5
A
307 324Right-handed alpha
Helix 15
AB6
A
336 341Right-handed 310
Helix 16
AB7
A
358 379Right-handed alpha
Helix 17
AB8
B
21 30Right-handed alpha
Helix 18
AB9
B
36 48Right-handed alpha
Helix 19
AC1
B
49 54Right-handed 310
Helix 20
AC2
B
63 68Right-handed alpha
Helix 21
AC3
B
72 85Right-handed alpha
Helix 22
AC4
B
90 97Right-handed 310
Helix 23
AC5
B
107 128Right-handed alpha
Helix 24
AC6
B
156 166Right-handed alpha
Helix 25
AC7
B
182 189Right-handed alpha
Helix 26
AC8
B
219 223Right-handed 310
Helix 27
AC9
B
236 256Right-handed alpha
Helix 28
AD1
B
265 269Right-handed 310
Helix 29
AD2
B
280 293Right-handed alpha
Helix 30
AD3
B
307 324Right-handed alpha
Helix 31
AD4
B
336 341Right-handed 310
Helix 32
AD5
B
358 376Right-handed alpha
Helix 33
AD6
C
21 30Right-handed alpha
Helix 34
AD7
C
36 48Right-handed alpha
Helix 35
AD8
C
49 54Right-handed 310
Helix 36
AD9
C
63 68Right-handed alpha
Helix 37
AE1
C
72 85Right-handed alpha
Helix 38
AE2
C
107 128Right-handed alpha
Helix 39
AE3
C
156 166Right-handed alpha
Helix 40
AE4
C
182 189Right-handed alpha
Helix 41
AE5
C
219 223Right-handed 310
Helix 42
AE6
C
236 256Right-handed alpha
Helix 43
AE7
C
265 269Right-handed 310
Helix 44
AE8
C
280 293Right-handed alpha
Helix 45
AE9
C
307 324Right-handed alpha
Helix 46
AF1
C
336 341Right-handed 310
Helix 47
AF2
C
358 376Right-handed alpha
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There are 3 sheets in PDB entry 6ODC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
17 19parallel
Strand 3
A
133 136parallel
Strand 4
A
297 301parallel
Strand 5
A
259 263parallel
Strand 6
A
172 176parallel
Strand 7
A
195 202parallel
Strand 8
A
226 231parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
17 19parallel
Strand 3
B
133 136parallel
Strand 4
B
297 301parallel
Strand 5
B
259 263parallel
Strand 6
B
172 176parallel
Strand 7
B
195 202parallel
Strand 8
B
226 231parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
17 19parallel
Strand 3
C
133 136parallel
Strand 4
C
297 301parallel
Strand 5
C
259 263parallel
Strand 6
C
172 176parallel
Strand 7
C
195 202parallel
Strand 8
C
226 231parallel
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