Analysis of interatomic Contacts of Structural Units in PDB entry:
6ODL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ODL entry

There are 2 chains in PDB entry 6ODL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8HIS 285
B
 ASN 7HIS 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6ODL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 74Right-handed alpha
Helix 2
AA2
A
97 105Right-handed alpha
Helix 3
AA3
A
120 123Right-handed 310
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
157 160Right-handed 310
Helix 6
AA6
A
172 180Right-handed alpha
Helix 7
AA7
A
182 190Right-handed alpha
Helix 8
AA8
A
191 193Right-handed 310
Helix 9
AA9
A
196 206Right-handed alpha
Helix 10
AB1
A
216 225Right-handed alpha
Helix 11
AB2
A
238 242Right-handed 310
Helix 12
AB3
A
255 270Right-handed alpha
Helix 13
AB4
A
270 280Right-handed alpha
Helix 14
AB5
B
61 74Right-handed alpha
Helix 15
AB6
B
97 105Right-handed alpha
Helix 16
AB7
B
120 123Right-handed 310
Helix 17
AB8
B
151 156Right-handed alpha
Helix 18
AB9
B
157 160Right-handed 310
Helix 19
AC1
B
172 180Right-handed alpha
Helix 20
AC2
B
182 190Right-handed alpha
Helix 21
AC3
B
191 193Right-handed 310
Helix 22
AC4
B
196 206Right-handed alpha
Helix 23
AC5
B
216 225Right-handed alpha
Helix 24
AC6
B
238 242Right-handed 310
Helix 25
AC7
B
255 269Right-handed alpha
Helix 26
AC8
B
270 280Right-handed alpha
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There are 8 sheets in PDB entry 6ODL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
52 60anti-parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
78 82parallel
Strand 5
A
9 13parallel
Strand 6
A
110 112parallel
Strand 7
A
248 250anti-parallel
Strand 8
A
125 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
95 96anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
243 245anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
211 215parallel
Strand 3
A
136 141anti-parallel
Strand 4
A
231 235anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
52 60anti-parallel
Strand 3
B
37 44anti-parallel
Strand 4
B
78 82parallel
Strand 5
B
9 13parallel
Strand 6
B
110 112parallel
Strand 7
B
248 250anti-parallel
Strand 8
B
125 127anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
95 96anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
243 245anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
211 215parallel
Strand 3
B
136 141anti-parallel
Strand 4
B
231 235anti-parallel
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