Analysis of interatomic Contacts of Structural Units in PDB entry:
6OE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OE4 entry

There are 5 chains in PDB entry 6OE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 27	ILE 506
D	ASN 27	ILE 506
C	GLU 1	GLY 212
B	VAL 2	LYS 214
E	VAL 2	LEU 4

There are 47 helices in PDB entry 6OE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	97	Right-handed alpha
Helix 2	AA2	A	148	159	Right-handed alpha
Helix 3	AA3	A	162	171	Right-handed alpha
Helix 4	AA4	A	195	202	Right-handed alpha
Helix 5	AA5	A	216	239	Right-handed alpha
Helix 6	AA6	A	253	263	Right-handed alpha
Helix 7	AA7	A	267	276	Right-handed alpha
Helix 8	AA8	A	277	284	Right-handed alpha
Helix 9	AA9	A	370	372	Right-handed 310
Helix 10	AB1	A	376	379	Right-handed 310
Helix 11	AB2	A	380	385	Right-handed alpha
Helix 12	AB3	A	473	478	Right-handed 310
Helix 13	AB4	A	492	505	Right-handed alpha
Helix 14	AB5	D	74	97	Right-handed alpha
Helix 15	AB6	D	148	159	Right-handed alpha
Helix 16	AB7	D	162	171	Right-handed alpha
Helix 17	AB8	D	195	202	Right-handed alpha
Helix 18	AB9	D	209	213	Right-handed 310
Helix 19	AC1	D	216	239	Right-handed alpha
Helix 20	AC2	D	253	263	Right-handed alpha
Helix 21	AC3	D	267	276	Right-handed alpha
Helix 22	AC4	D	277	284	Right-handed alpha
Helix 23	AC5	D	370	372	Right-handed 310
Helix 24	AC6	D	376	379	Right-handed 310
Helix 25	AC7	D	380	385	Right-handed alpha
Helix 26	AC8	D	473	478	Right-handed 310
Helix 27	AC9	D	492	506	Right-handed alpha
Helix 28	AD1	C	79	83	Right-handed 310
Helix 29	AD2	C	121	128	Right-handed alpha
Helix 30	AD3	C	183	187	Right-handed alpha
Helix 31	AD4	B	63	65	Right-handed 310
Helix 32	AD5	B	73	75	Right-handed 310
Helix 33	AD6	B	83	87	Right-handed 310
Helix 34	AD7	B	127	129	Right-handed 310
Helix 35	AD8	B	156	158	Right-handed 310
Helix 36	AD9	B	187	189	Right-handed 310
Helix 37	AE1	B	201	204	Right-handed 310
Helix 38	AE2	E	63	65	Right-handed 310
Helix 39	AE3	E	73	75	Right-handed 310
Helix 40	AE4	E	83	87	Right-handed 310
Helix 41	AE5	E	127	129	Right-handed 310
Helix 42	AE6	E	156	158	Right-handed 310
Helix 43	AE7	E	187	189	Right-handed 310
Helix 44	AE8	E	201	204	Right-handed 310
Helix 45	AE9	F	79	83	Right-handed 310
Helix 46	AF1	F	121	128	Right-handed alpha
Helix 47	AF2	F	183	187	Right-handed alpha

There are 34 sheets in PDB entry 6OE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	296	318	anti-parallel
Strand 5	A	340	345	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	469	first strand
Strand 2	A	29	33	parallel
Strand 3	A	38	60	anti-parallel
Strand 4	A	364	368	parallel
Strand 5	A	359	361	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	60	first strand
Strand 2	A	296	318	anti-parallel
Strand 3	A	286	293	anti-parallel
Strand 4	A	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	490	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	180	first strand
Strand 2	D	186	194	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	296	318	anti-parallel
Strand 5	D	340	345	anti-parallel
Strand 6	D	348	352	anti-parallel
Strand 7	D	373	375	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	469	first strand
Strand 2	D	29	33	parallel
Strand 3	D	38	60	anti-parallel
Strand 4	D	364	368	parallel
Strand 5	D	359	361	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	60	first strand
Strand 2	D	296	318	anti-parallel
Strand 3	D	286	293	anti-parallel
Strand 4	D	243	244	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	333	336	anti-parallel
Strand 3	D	394	398	anti-parallel
Strand 4	D	490	491	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	407	first strand
Strand 2	D	411	416	anti-parallel
Strand 3	D	438	443	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	422	426	anti-parallel
Strand 3	D	449	452	anti-parallel
Strand 4	D	455	458	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	205	209	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	135	145	anti-parallel
Strand 3	B	176	185	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	135	145	anti-parallel
Strand 3	B	176	185	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	205	211	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	96	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	96	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	135	145	anti-parallel
Strand 3	E	176	185	anti-parallel
Strand 4	E	163	165	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	135	145	anti-parallel
Strand 3	E	176	185	anti-parallel
Strand 4	E	169	170	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	194	200	anti-parallel
Strand 3	E	205	211	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	150	first strand
Strand 2	F	192	198	anti-parallel
Strand 3	F	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OE4