Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OEA entry

There are 3 chains in PDB entry 6OEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2VAL 270
B
 C 1 G 10
C
 G 1 G 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6OEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
203 207Right-handed 310
Helix 9
AA9
A
219 228Right-handed alpha
Helix 10
AB1
A
233 239Right-handed alpha
Helix 11
AB2
A
253 258Right-handed 310
Helix 12
AB3
A
263 268Right-handed 310
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There are 5 sheets in PDB entry 6OEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
5 7anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
137 143anti-parallel
Strand 5
A
248 251anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
27 28anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
68 75parallel
Strand 3
A
192 201parallel
Strand 4
A
96 98parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
192 201parallel
Strand 3
A
212 214anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
192 201anti-parallel
Strand 3
A
174 183anti-parallel
Strand 4
A
117 122anti-parallel
Strand 5
A
49 55anti-parallel
Strand 6
A
68 75anti-parallel
Strand 7
A
31 32parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il