Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OEM entry

There are 10 chains in PDB entry 6OEM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 400	ALA 1008
C	HIS 395	ALA 1008
B	MET 1	SER 351
D	MET 1	SER 351
G	C 1	C 57
I	G 1	G 46
F	C 1	C 46
J	G 1	G 57
N	PRO 99	THR 136
H	ALA 101	TYR 155

There are 61 helices in PDB entry 6OEM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	400	423	Right-handed alpha
Helix 2	AA2	A	426	442	Right-handed alpha
Helix 3	AA3	A	444	457	Right-handed alpha
Helix 4	AA4	A	463	474	Right-handed alpha
Helix 5	AA5	A	478	493	Right-handed alpha
Helix 6	AA6	A	499	511	Right-handed alpha
Helix 7	AA7	A	558	570	Right-handed alpha
Helix 8	AA8	A	570	581	Right-handed alpha
Helix 9	AA9	A	664	683	Right-handed alpha
Helix 10	AB1	A	708	716	Right-handed alpha
Helix 11	AB2	A	733	740	Right-handed alpha
Helix 12	AB3	A	749	763	Right-handed alpha
Helix 13	AB4	A	768	777	Right-handed alpha
Helix 14	AB5	A	792	812	Right-handed alpha
Helix 15	AB6	A	822	841	Right-handed alpha
Helix 16	AB7	A	850	858	Right-handed alpha
Helix 17	AB8	A	859	868	Right-handed alpha
Helix 18	AB9	A	874	894	Right-handed alpha
Helix 19	AC1	A	902	907	Right-handed alpha
Helix 20	AC2	A	908	923	Right-handed alpha
Helix 21	AC3	A	933	941	Right-handed alpha
Helix 22	AC4	A	942	950	Right-handed alpha
Helix 23	AC5	A	965	975	Right-handed alpha
Helix 24	AC6	A	981	995	Right-handed alpha
Helix 25	AC7	A	996	1004	Right-handed alpha
Helix 26	AC8	A	1005	1007	Right-handed 310
Helix 27	AC9	C	395	399	Right-handed 310
Helix 28	AD1	C	400	423	Right-handed alpha
Helix 29	AD2	C	426	441	Right-handed alpha
Helix 30	AD3	C	444	457	Right-handed alpha
Helix 31	AD4	C	463	474	Right-handed alpha
Helix 32	AD5	C	477	493	Right-handed alpha
Helix 33	AD6	C	499	509	Right-handed alpha
Helix 34	AD7	C	558	570	Right-handed alpha
Helix 35	AD8	C	570	581	Right-handed alpha
Helix 36	AD9	C	664	683	Right-handed alpha
Helix 37	AE1	C	708	713	Right-handed alpha
Helix 38	AE2	C	733	740	Right-handed alpha
Helix 39	AE3	C	749	763	Right-handed alpha
Helix 40	AE4	C	768	776	Right-handed alpha
Helix 41	AE5	C	792	813	Right-handed alpha
Helix 42	AE6	C	822	841	Right-handed alpha
Helix 43	AE7	C	850	858	Right-handed alpha
Helix 44	AE8	C	859	868	Right-handed alpha
Helix 45	AE9	C	872	894	Right-handed alpha
Helix 46	AF1	C	902	907	Right-handed alpha
Helix 47	AF2	C	908	923	Right-handed alpha
Helix 48	AF3	C	933	941	Right-handed alpha
Helix 49	AF4	C	942	950	Right-handed alpha
Helix 50	AF5	C	963	974	Right-handed alpha
Helix 51	AF6	C	981	995	Right-handed alpha
Helix 52	AF7	C	996	1004	Right-handed alpha
Helix 53	AF8	C	1005	1008	Right-handed 310
Helix 54	AF9	B	308	314	Right-handed alpha
Helix 55	AG1	D	308	314	Right-handed alpha
Helix 56	AG2	N	100	117	Right-handed alpha
Helix 57	AG3	N	123	136	Right-handed alpha
Helix 58	AG4	H	102	117	Right-handed alpha
Helix 59	AG5	H	121	136	Right-handed alpha
Helix 60	AG6	H	137	140	Right-handed 310
Helix 61	AG7	H	141	155	Right-handed alpha

There are 22 sheets in PDB entry 6OEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	591	604	parallel
Strand 5	A	618	632	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	556	anti-parallel
Strand 8	A	535	536	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	591	604	parallel
Strand 5	A	618	632	anti-parallel
Strand 6	A	637	642	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	689	anti-parallel
Strand 3	C	696	706	anti-parallel
Strand 4	C	591	598	parallel
Strand 5	C	618	633	anti-parallel
Strand 6	C	601	604	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	555	556	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	618	633	anti-parallel
Strand 5	C	636	642	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	321	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	46	47	anti-parallel
Strand 4	B	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	107	110	anti-parallel
Strand 4	B	125	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	119	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	196	parallel
Strand 3	B	181	185	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	252	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	267	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	288	292	anti-parallel
Strand 4	B	297	301	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	47	anti-parallel
Strand 4	D	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	107	110	anti-parallel
Strand 4	D	125	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	119	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	141	147	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	267	first strand
Strand 2	D	270	273	anti-parallel
Strand 3	D	288	292	anti-parallel
Strand 4	D	297	301	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OEM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEM