Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OEO entry

There are 9 chains in PDB entry 6OEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 401	ALA 1008
B	MET 1	SER 351
C	ARG 393	ALA 1008
D	MET 1	SER 351
F	C 1	C 46
I	G 1	G 46
G	C 1	C 57
J	G 1	G 57
N	ALA 101	TYR 155

There are 60 helices in PDB entry 6OEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	401	408	Right-handed alpha
Helix 2	AA2	A	408	422	Right-handed alpha
Helix 3	AA3	A	426	442	Right-handed alpha
Helix 4	AA4	A	444	457	Right-handed alpha
Helix 5	AA5	A	463	474	Right-handed alpha
Helix 6	AA6	A	479	493	Right-handed alpha
Helix 7	AA7	A	500	508	Right-handed alpha
Helix 8	AA8	A	559	570	Right-handed alpha
Helix 9	AA9	A	570	581	Right-handed alpha
Helix 10	AB1	A	664	682	Right-handed alpha
Helix 11	AB2	A	708	716	Right-handed alpha
Helix 12	AB3	A	733	738	Right-handed alpha
Helix 13	AB4	A	749	763	Right-handed alpha
Helix 14	AB5	A	768	776	Right-handed alpha
Helix 15	AB6	A	793	813	Right-handed alpha
Helix 16	AB7	A	824	841	Right-handed alpha
Helix 17	AB8	A	850	858	Right-handed alpha
Helix 18	AB9	A	859	870	Right-handed alpha
Helix 19	AC1	A	873	890	Right-handed alpha
Helix 20	AC2	A	890	895	Right-handed alpha
Helix 21	AC3	A	904	923	Right-handed alpha
Helix 22	AC4	A	934	942	Right-handed alpha
Helix 23	AC5	A	942	951	Right-handed alpha
Helix 24	AC6	A	958	973	Right-handed alpha
Helix 25	AC7	A	984	995	Right-handed alpha
Helix 26	AC8	A	999	1004	Right-handed alpha
Helix 27	AC9	B	11	15	Right-handed 310
Helix 28	AD1	B	308	314	Right-handed alpha
Helix 29	AD2	C	402	423	Right-handed alpha
Helix 30	AD3	C	427	441	Right-handed alpha
Helix 31	AD4	C	444	455	Right-handed alpha
Helix 32	AD5	C	463	474	Right-handed alpha
Helix 33	AD6	C	478	493	Right-handed alpha
Helix 34	AD7	C	500	508	Right-handed alpha
Helix 35	AD8	C	558	569	Right-handed alpha
Helix 36	AD9	C	570	581	Right-handed alpha
Helix 37	AE1	C	664	682	Right-handed alpha
Helix 38	AE2	C	708	715	Right-handed alpha
Helix 39	AE3	C	733	740	Right-handed alpha
Helix 40	AE4	C	750	763	Right-handed alpha
Helix 41	AE5	C	768	777	Right-handed alpha
Helix 42	AE6	C	792	814	Right-handed alpha
Helix 43	AE7	C	824	842	Right-handed alpha
Helix 44	AE8	C	850	858	Right-handed alpha
Helix 45	AE9	C	859	868	Right-handed alpha
Helix 46	AF1	C	872	895	Right-handed alpha
Helix 47	AF2	C	902	923	Right-handed alpha
Helix 48	AF3	C	933	942	Right-handed alpha
Helix 49	AF4	C	942	951	Right-handed alpha
Helix 50	AF5	C	953	957	Right-handed 310
Helix 51	AF6	C	958	963	Right-handed alpha
Helix 52	AF7	C	963	975	Right-handed alpha
Helix 53	AF8	C	984	995	Right-handed alpha
Helix 54	AF9	C	999	1004	Right-handed alpha
Helix 55	AG1	D	11	15	Right-handed 310
Helix 56	AG2	D	308	313	Right-handed alpha
Helix 57	AG3	D	334	338	Right-handed 310
Helix 58	AG4	N	102	117	Right-handed alpha
Helix 59	AG5	N	121	135	Right-handed alpha
Helix 60	AG6	N	141	155	Right-handed alpha

There are 19 sheets in PDB entry 6OEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	707	anti-parallel
Strand 4	A	590	599	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	556	anti-parallel
Strand 8	A	535	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	707	anti-parallel
Strand 4	A	590	599	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	636	642	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	344	349	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	122	127	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	234	239	anti-parallel
Strand 4	B	246	251	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	267	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	301	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	282	283	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	686	690	anti-parallel
Strand 3	C	695	704	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	686	690	anti-parallel
Strand 3	C	695	704	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	636	642	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	58	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	107	116	anti-parallel
Strand 4	D	119	127	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	191	195	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	176	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	212	first strand
Strand 2	D	215	220	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	267	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	288	292	anti-parallel
Strand 4	D	297	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEO