Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OEP entry

There are 8 chains in PDB entry 6OEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 401	ALA 1008
B	MET 1	SER 351
C	HIS 395	ALA 1008
D	MET 1	SER 351
F	C 1	C 46
I	G 1	G 46
G	C 1	C 57
J	G 1	G 57

There are 62 helices in PDB entry 6OEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	401	408	Right-handed alpha
Helix 2	AA2	A	408	422	Right-handed alpha
Helix 3	AA3	A	426	441	Right-handed alpha
Helix 4	AA4	A	444	457	Right-handed alpha
Helix 5	AA5	A	463	473	Right-handed alpha
Helix 6	AA6	A	479	493	Right-handed alpha
Helix 7	AA7	A	499	505	Right-handed alpha
Helix 8	AA8	A	559	568	Right-handed alpha
Helix 9	AA9	A	570	581	Right-handed alpha
Helix 10	AB1	A	664	682	Right-handed alpha
Helix 11	AB2	A	708	715	Right-handed alpha
Helix 12	AB3	A	733	738	Right-handed alpha
Helix 13	AB4	A	750	763	Right-handed alpha
Helix 14	AB5	A	768	777	Right-handed alpha
Helix 15	AB6	A	793	813	Right-handed alpha
Helix 16	AB7	A	824	842	Right-handed alpha
Helix 17	AB8	A	850	858	Right-handed alpha
Helix 18	AB9	A	859	870	Right-handed alpha
Helix 19	AC1	A	873	890	Right-handed alpha
Helix 20	AC2	A	890	895	Right-handed alpha
Helix 21	AC3	A	904	923	Right-handed alpha
Helix 22	AC4	A	933	942	Right-handed alpha
Helix 23	AC5	A	942	950	Right-handed alpha
Helix 24	AC6	A	958	964	Right-handed alpha
Helix 25	AC7	A	964	975	Right-handed alpha
Helix 26	AC8	A	982	995	Right-handed alpha
Helix 27	AC9	A	996	1001	Right-handed alpha
Helix 28	AD1	B	11	15	Right-handed 310
Helix 29	AD2	B	308	314	Right-handed alpha
Helix 30	AD3	C	400	408	Right-handed alpha
Helix 31	AD4	C	408	422	Right-handed alpha
Helix 32	AD5	C	426	441	Right-handed alpha
Helix 33	AD6	C	444	457	Right-handed alpha
Helix 34	AD7	C	463	474	Right-handed alpha
Helix 35	AD8	C	478	493	Right-handed alpha
Helix 36	AD9	C	499	509	Right-handed alpha
Helix 37	AE1	C	558	569	Right-handed alpha
Helix 38	AE2	C	570	581	Right-handed alpha
Helix 39	AE3	C	664	682	Right-handed alpha
Helix 40	AE4	C	683	685	Right-handed 310
Helix 41	AE5	C	708	716	Right-handed alpha
Helix 42	AE6	C	733	740	Right-handed alpha
Helix 43	AE7	C	750	763	Right-handed alpha
Helix 44	AE8	C	768	777	Right-handed alpha
Helix 45	AE9	C	792	812	Right-handed alpha
Helix 46	AF1	C	822	841	Right-handed alpha
Helix 47	AF2	C	850	858	Right-handed alpha
Helix 48	AF3	C	859	867	Right-handed alpha
Helix 49	AF4	C	868	870	Right-handed 310
Helix 50	AF5	C	873	890	Right-handed alpha
Helix 51	AF6	C	897	902	Right-handed alpha
Helix 52	AF7	C	902	907	Right-handed alpha
Helix 53	AF8	C	908	923	Right-handed alpha
Helix 54	AF9	C	933	941	Right-handed alpha
Helix 55	AG1	C	942	950	Right-handed alpha
Helix 56	AG2	C	964	974	Right-handed alpha
Helix 57	AG3	C	982	994	Right-handed alpha
Helix 58	AG4	C	996	1004	Right-handed alpha
Helix 59	AG5	C	1005	1008	Right-handed 310
Helix 60	AG6	D	11	15	Right-handed 310
Helix 61	AG7	D	168	172	Right-handed 310
Helix 62	AG8	D	308	314	Right-handed alpha

There are 20 sheets in PDB entry 6OEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	601	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	556	anti-parallel
Strand 8	A	535	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	601	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	636	642	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	344	349	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	122	127	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	252	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	267	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	301	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	689	anti-parallel
Strand 3	C	696	706	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	689	anti-parallel
Strand 3	C	696	706	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	636	642	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	47	anti-parallel
Strand 4	D	58	59	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	54	55	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	107	110	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	196	parallel
Strand 3	D	181	185	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	141	147	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	216	219	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	250	251	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	267	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	288	292	anti-parallel
Strand 4	D	297	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OEP