Analysis of interatomic Contacts of Structural Units in PDB entry:
6OER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OER entry

There are 9 chains in PDB entry 6OER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 401	ALA 1008
B	MET 1	SER 351
C	ARG 393	ALA 1008
D	MET 1	SER 351
F	C 1	C 46
I	G 1	G 46
G	C 1	C 57
J	G 1	G 57
H	PRO 99	THR 136

There are 60 helices in PDB entry 6OER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	401	424	Right-handed alpha
Helix 2	AA2	A	426	442	Right-handed alpha
Helix 3	AA3	A	444	457	Right-handed alpha
Helix 4	AA4	A	463	473	Right-handed alpha
Helix 5	AA5	A	477	493	Right-handed alpha
Helix 6	AA6	A	499	508	Right-handed alpha
Helix 7	AA7	A	558	568	Right-handed alpha
Helix 8	AA8	A	570	581	Right-handed alpha
Helix 9	AA9	A	664	682	Right-handed alpha
Helix 10	AB1	A	708	717	Right-handed alpha
Helix 11	AB2	A	733	740	Right-handed alpha
Helix 12	AB3	A	749	763	Right-handed alpha
Helix 13	AB4	A	768	776	Right-handed alpha
Helix 14	AB5	A	793	813	Right-handed alpha
Helix 15	AB6	A	824	842	Right-handed alpha
Helix 16	AB7	A	850	858	Right-handed alpha
Helix 17	AB8	A	859	867	Right-handed alpha
Helix 18	AB9	A	868	870	Right-handed 310
Helix 19	AC1	A	874	895	Right-handed alpha
Helix 20	AC2	A	897	901	Right-handed 310
Helix 21	AC3	A	902	924	Right-handed alpha
Helix 22	AC4	A	934	942	Right-handed alpha
Helix 23	AC5	A	942	951	Right-handed alpha
Helix 24	AC6	A	958	975	Right-handed alpha
Helix 25	AC7	A	981	996	Right-handed alpha
Helix 26	AC8	A	999	1004	Right-handed alpha
Helix 27	AC9	B	308	314	Right-handed alpha
Helix 28	AD1	C	400	408	Right-handed alpha
Helix 29	AD2	C	408	423	Right-handed alpha
Helix 30	AD3	C	427	441	Right-handed alpha
Helix 31	AD4	C	444	456	Right-handed alpha
Helix 32	AD5	C	463	474	Right-handed alpha
Helix 33	AD6	C	477	493	Right-handed alpha
Helix 34	AD7	C	500	509	Right-handed alpha
Helix 35	AD8	C	558	569	Right-handed alpha
Helix 36	AD9	C	570	581	Right-handed alpha
Helix 37	AE1	C	664	683	Right-handed alpha
Helix 38	AE2	C	708	716	Right-handed alpha
Helix 39	AE3	C	735	740	Right-handed alpha
Helix 40	AE4	C	750	763	Right-handed alpha
Helix 41	AE5	C	768	777	Right-handed alpha
Helix 42	AE6	C	792	813	Right-handed alpha
Helix 43	AE7	C	824	841	Right-handed alpha
Helix 44	AE8	C	850	858	Right-handed alpha
Helix 45	AE9	C	859	867	Right-handed alpha
Helix 46	AF1	C	868	870	Right-handed 310
Helix 47	AF2	C	873	895	Right-handed alpha
Helix 48	AF3	C	902	923	Right-handed alpha
Helix 49	AF4	C	933	942	Right-handed alpha
Helix 50	AF5	C	942	951	Right-handed alpha
Helix 51	AF6	C	958	964	Right-handed alpha
Helix 52	AF7	C	964	975	Right-handed alpha
Helix 53	AF8	C	981	995	Right-handed alpha
Helix 54	AF9	C	999	1004	Right-handed alpha
Helix 55	AG1	D	11	15	Right-handed 310
Helix 56	AG2	D	168	172	Right-handed 310
Helix 57	AG3	D	308	313	Right-handed alpha
Helix 58	AG4	H	102	107	Right-handed alpha
Helix 59	AG5	H	110	115	Right-handed alpha
Helix 60	AG6	H	123	136	Right-handed alpha

There are 20 sheets in PDB entry 6OER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	600	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	557	anti-parallel
Strand 8	A	534	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	600	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	636	642	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	2	8	parallel
Strand 6	B	344	349	anti-parallel
Strand 7	B	326	331	anti-parallel
Strand 8	B	318	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	107	115	anti-parallel
Strand 4	B	120	127	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	102	103	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	251	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	267	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	301	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	282	283	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	520	first strand
Strand 2	C	686	690	anti-parallel
Strand 3	C	695	702	anti-parallel
Strand 4	C	590	595	parallel
Strand 5	C	626	631	anti-parallel
Strand 6	C	638	642	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	554	557	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	619	624	anti-parallel
Strand 5	C	598	602	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	54	58	parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	27	31	anti-parallel
Strand 5	D	20	24	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	107	116	anti-parallel
Strand 4	D	119	127	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	102	103	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	141	147	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	212	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	267	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	288	291	anti-parallel
Strand 4	D	298	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OER

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OER