Analysis of interatomic Contacts of Structural Units in PDB entry:
6OF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OF2 entry

There are 4 chains in PDB entry 6OF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 363
B	MET 109	HIS 727
D	MET 1	VAL 363
E	MET 109	HIS 727

There are 42 helices in PDB entry 6OF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	23	28	Right-handed alpha
Helix 3	AA3	A	41	64	Right-handed alpha
Helix 4	AA4	A	67	84	Right-handed alpha
Helix 5	AA5	A	93	115	Right-handed alpha
Helix 6	AA6	A	123	132	Right-handed alpha
Helix 7	AA7	A	134	147	Right-handed alpha
Helix 8	AA8	A	151	170	Right-handed alpha
Helix 9	AA9	A	171	175	Right-handed 310
Helix 10	AB1	B	196	203	Right-handed alpha
Helix 11	AB2	B	204	211	Right-handed 310
Helix 12	AB3	B	242	257	Right-handed alpha
Helix 13	AB4	B	273	288	Right-handed alpha
Helix 14	AB5	B	330	334	Right-handed 310
Helix 15	AB6	B	367	387	Right-handed alpha
Helix 16	AB7	B	403	417	Right-handed alpha
Helix 17	AB8	B	429	443	Right-handed alpha
Helix 18	AB9	B	470	484	Right-handed alpha
Helix 19	AC1	B	535	544	Right-handed alpha
Helix 20	AC2	B	654	660	Right-handed alpha
Helix 21	AC3	B	676	691	Right-handed alpha
Helix 22	AC4	D	11	23	Right-handed alpha
Helix 23	AC5	D	23	28	Right-handed alpha
Helix 24	AC6	D	41	64	Right-handed alpha
Helix 25	AC7	D	67	84	Right-handed alpha
Helix 26	AC8	D	93	115	Right-handed alpha
Helix 27	AC9	D	123	132	Right-handed alpha
Helix 28	AD1	D	134	147	Right-handed alpha
Helix 29	AD2	D	151	170	Right-handed alpha
Helix 30	AD3	D	171	175	Right-handed 310
Helix 31	AD4	E	196	203	Right-handed alpha
Helix 32	AD5	E	204	211	Right-handed 310
Helix 33	AD6	E	242	257	Right-handed alpha
Helix 34	AD7	E	273	288	Right-handed alpha
Helix 35	AD8	E	330	334	Right-handed 310
Helix 36	AD9	E	367	387	Right-handed alpha
Helix 37	AE1	E	403	417	Right-handed alpha
Helix 38	AE2	E	429	443	Right-handed alpha
Helix 39	AE3	E	470	484	Right-handed alpha
Helix 40	AE4	E	535	544	Right-handed alpha
Helix 41	AE5	E	654	660	Right-handed alpha
Helix 42	AE6	E	676	691	Right-handed alpha

There are 12 sheets in PDB entry 6OF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	B	723	725	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	349	first strand
Strand 2	B	511	514	anti-parallel
Strand 3	B	646	650	anti-parallel
Strand 4	B	627	639	anti-parallel
Strand 5	B	547	553	anti-parallel
Strand 6	B	667	670	anti-parallel
Strand 7	B	527	529	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	187	193	anti-parallel
Strand 4	B	142	151	anti-parallel
Strand 5	B	168	172	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	187	193	anti-parallel
Strand 4	B	142	151	anti-parallel
Strand 5	B	221	222	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	181	183	anti-parallel
Strand 3	B	154	156	anti-parallel
Strand 4	B	159	161	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	358	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	300	304	anti-parallel
Strand 4	B	393	396	parallel
Strand 5	B	263	267	parallel
Strand 6	B	420	423	parallel
Strand 7	B	448	450	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	E	723	725	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	349	first strand
Strand 2	E	511	514	anti-parallel
Strand 3	E	646	650	anti-parallel
Strand 4	E	627	639	anti-parallel
Strand 5	E	547	553	anti-parallel
Strand 6	E	667	670	anti-parallel
Strand 7	E	527	529	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	125	first strand
Strand 2	E	128	133	anti-parallel
Strand 3	E	187	193	anti-parallel
Strand 4	E	142	151	anti-parallel
Strand 5	E	168	172	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	125	first strand
Strand 2	E	128	133	anti-parallel
Strand 3	E	187	193	anti-parallel
Strand 4	E	142	151	anti-parallel
Strand 5	E	221	222	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	181	183	anti-parallel
Strand 3	E	154	156	anti-parallel
Strand 4	E	159	161	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	358	first strand
Strand 2	E	317	323	anti-parallel
Strand 3	E	300	304	anti-parallel
Strand 4	E	393	396	parallel
Strand 5	E	263	267	parallel
Strand 6	E	420	423	parallel
Strand 7	E	448	450	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OF2