Analysis of interatomic Contacts of Structural Units in PDB entry:
6OF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OF4 entry

There are 4 chains in PDB entry 6OF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 363
B
 MET 109HIS 727
D
 MET 1VAL 363
E
 MET 109HIS 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6OF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
23 28Right-handed alpha
Helix 3
AA3
A
41 64Right-handed alpha
Helix 4
AA4
A
67 84Right-handed alpha
Helix 5
AA5
A
95 115Right-handed alpha
Helix 6
AA6
A
123 132Right-handed alpha
Helix 7
AA7
A
134 147Right-handed alpha
Helix 8
AA8
A
151 170Right-handed alpha
Helix 9
AA9
A
171 174Right-handed 310
Helix 10
AB1
B
196 202Right-handed alpha
Helix 11
AB2
B
203 211Right-handed 310
Helix 12
AB3
B
242 258Right-handed alpha
Helix 13
AB4
B
273 288Right-handed alpha
Helix 14
AB5
B
292 296Right-handed 310
Helix 15
AB6
B
330 334Right-handed 310
Helix 16
AB7
B
367 387Right-handed alpha
Helix 17
AB8
B
403 417Right-handed alpha
Helix 18
AB9
B
429 443Right-handed alpha
Helix 19
AC1
B
470 484Right-handed alpha
Helix 20
AC2
B
535 544Right-handed alpha
Helix 21
AC3
B
654 660Right-handed alpha
Helix 22
AC4
B
677 691Right-handed alpha
Helix 23
AC5
D
11 23Right-handed alpha
Helix 24
AC6
D
23 28Right-handed alpha
Helix 25
AC7
D
41 64Right-handed alpha
Helix 26
AC8
D
67 84Right-handed alpha
Helix 27
AC9
D
95 115Right-handed alpha
Helix 28
AD1
D
123 132Right-handed alpha
Helix 29
AD2
D
134 147Right-handed alpha
Helix 30
AD3
D
151 170Right-handed alpha
Helix 31
AD4
D
171 174Right-handed 310
Helix 32
AD5
E
196 202Right-handed alpha
Helix 33
AD6
E
203 211Right-handed 310
Helix 34
AD7
E
242 258Right-handed alpha
Helix 35
AD8
E
273 288Right-handed alpha
Helix 36
AD9
E
292 296Right-handed 310
Helix 37
AE1
E
330 334Right-handed 310
Helix 38
AE2
E
367 387Right-handed alpha
Helix 39
AE3
E
403 417Right-handed alpha
Helix 40
AE4
E
429 443Right-handed alpha
Helix 41
AE5
E
470 484Right-handed alpha
Helix 42
AE6
E
535 544Right-handed alpha
Helix 43
AE7
E
654 660Right-handed alpha
Helix 44
AE8
E
677 691Right-handed alpha
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There are 10 sheets in PDB entry 6OF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
B
723 725anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
B
511 514anti-parallel
Strand 3
B
646 650anti-parallel
Strand 4
B
627 639anti-parallel
Strand 5
B
547 553anti-parallel
Strand 6
B
667 670anti-parallel
Strand 7
B
527 529parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
137 147anti-parallel
Strand 5
B
168 171anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
154 156anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
137 147anti-parallel
Strand 5
B
221 223anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 358first strand
Strand 2
B
317 323anti-parallel
Strand 3
B
300 304anti-parallel
Strand 4
B
393 396parallel
Strand 5
B
263 267parallel
Strand 6
B
420 423parallel
Strand 7
B
448 450parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
E
723 725anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
347 349first strand
Strand 2
E
511 514anti-parallel
Strand 3
E
646 650anti-parallel
Strand 4
E
627 639anti-parallel
Strand 5
E
547 553anti-parallel
Strand 6
E
667 670anti-parallel
Strand 7
E
527 529parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 125first strand
Strand 2
E
128 133anti-parallel
Strand 3
E
187 193anti-parallel
Strand 4
E
137 147anti-parallel
Strand 5
E
168 171anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 161first strand
Strand 2
E
154 156anti-parallel
Strand 3
E
180 183anti-parallel
Strand 4
E
137 147anti-parallel
Strand 5
E
221 223anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
351 358first strand
Strand 2
E
317 323anti-parallel
Strand 3
E
300 304anti-parallel
Strand 4
E
393 396parallel
Strand 5
E
263 267parallel
Strand 6
E
420 423parallel
Strand 7
E
448 450parallel
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