Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OFB entry

There are 2 chains in PDB entry 6OFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	GLU 698
B	ARG 3	GLU 698

There are 56 helices in PDB entry 6OFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	36	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed 310
Helix 3	AA3	A	59	75	Right-handed alpha
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	124	128	Right-handed 310
Helix 6	AA6	A	144	152	Right-handed alpha
Helix 7	AA7	A	174	180	Right-handed 310
Helix 8	AA8	A	183	192	Right-handed alpha
Helix 9	AA9	A	208	224	Right-handed alpha
Helix 10	AB1	A	275	287	Right-handed alpha
Helix 11	AB2	A	310	314	Right-handed 310
Helix 12	AB3	A	327	348	Right-handed alpha
Helix 13	AB4	A	359	382	Right-handed alpha
Helix 14	AB5	A	384	396	Right-handed alpha
Helix 15	AB6	A	404	412	Right-handed alpha
Helix 16	AB7	A	424	439	Right-handed alpha
Helix 17	AB8	A	447	463	Right-handed alpha
Helix 18	AB9	A	468	472	Right-handed 310
Helix 19	AC1	A	474	504	Right-handed alpha
Helix 20	AC2	A	517	524	Right-handed alpha
Helix 21	AC3	A	543	559	Right-handed alpha
Helix 22	AC4	A	562	569	Right-handed alpha
Helix 23	AC5	A	586	592	Right-handed alpha
Helix 24	AC6	A	594	607	Right-handed alpha
Helix 25	AC7	A	611	623	Right-handed alpha
Helix 26	AC8	A	628	647	Right-handed alpha
Helix 27	AC9	A	647	652	Right-handed alpha
Helix 28	AD1	A	680	695	Right-handed alpha
Helix 29	AD2	B	18	36	Right-handed alpha
Helix 30	AD3	B	53	58	Right-handed 310
Helix 31	AD4	B	59	76	Right-handed alpha
Helix 32	AD5	B	77	80	Right-handed 310
Helix 33	AD6	B	124	128	Right-handed 310
Helix 34	AD7	B	144	152	Right-handed alpha
Helix 35	AD8	B	176	180	Right-handed 310
Helix 36	AD9	B	183	191	Right-handed alpha
Helix 37	AE1	B	208	224	Right-handed alpha
Helix 38	AE2	B	275	283	Right-handed alpha
Helix 39	AE3	B	285	293	Right-handed alpha
Helix 40	AE4	B	327	347	Right-handed alpha
Helix 41	AE5	B	359	382	Right-handed alpha
Helix 42	AE6	B	384	396	Right-handed alpha
Helix 43	AE7	B	404	412	Right-handed alpha
Helix 44	AE8	B	424	439	Right-handed alpha
Helix 45	AE9	B	447	463	Right-handed alpha
Helix 46	AF1	B	468	472	Right-handed 310
Helix 47	AF2	B	474	504	Right-handed alpha
Helix 48	AF3	B	517	524	Right-handed alpha
Helix 49	AF4	B	543	558	Right-handed alpha
Helix 50	AF5	B	562	569	Right-handed alpha
Helix 51	AF6	B	586	592	Right-handed alpha
Helix 52	AF7	B	594	607	Right-handed alpha
Helix 53	AF8	B	611	623	Right-handed alpha
Helix 54	AF9	B	628	647	Right-handed alpha
Helix 55	AG1	B	647	652	Right-handed alpha
Helix 56	AG2	B	680	697	Right-handed alpha

There are 10 sheets in PDB entry 6OFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	113	first strand
Strand 2	A	95	103	anti-parallel
Strand 3	A	83	92	anti-parallel
Strand 4	A	40	42	parallel
Strand 5	A	4	12	parallel
Strand 6	A	266	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	274	first strand
Strand 2	A	4	12	anti-parallel
Strand 3	A	226	234	parallel
Strand 4	A	247	250	anti-parallel
Strand 5	A	253	257	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	226	234	anti-parallel
Strand 3	A	195	200	parallel
Strand 4	A	169	172	parallel
Strand 5	A	162	164	anti-parallel
Strand 6	A	300	302	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	155	159	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	446	first strand
Strand 2	A	413	419	parallel
Strand 3	A	351	355	parallel
Strand 4	A	510	512	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	96	104	anti-parallel
Strand 3	B	83	91	anti-parallel
Strand 4	B	40	42	parallel
Strand 5	B	4	12	parallel
Strand 6	B	266	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	274	first strand
Strand 2	B	4	12	anti-parallel
Strand 3	B	226	234	parallel
Strand 4	B	247	250	anti-parallel
Strand 5	B	253	257	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	226	234	anti-parallel
Strand 3	B	195	199	parallel
Strand 4	B	169	174	parallel
Strand 5	B	162	164	anti-parallel
Strand 6	B	300	302	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	155	159	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	446	first strand
Strand 2	B	413	419	parallel
Strand 3	B	352	355	parallel
Strand 4	B	511	512	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFB