Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OFD entry

There are 4 chains in PDB entry 6OFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	SER 431
B	ASN 8	THR 432
D	ASN 8	SER 431
C	ASN 8	ASP 430

There are 40 helices in PDB entry 6OFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	139	151	Right-handed alpha
Helix 3	AA3	A	167	175	Right-handed 310
Helix 4	AA4	A	176	191	Right-handed alpha
Helix 5	AA5	A	200	205	Right-handed alpha
Helix 6	AA6	A	207	211	Right-handed 310
Helix 7	AA7	A	216	223	Right-handed alpha
Helix 8	AA8	A	226	231	Right-handed 310
Helix 9	AA9	A	260	273	Right-handed alpha
Helix 10	AB1	A	300	314	Right-handed alpha
Helix 11	AB2	B	15	19	Right-handed 310
Helix 12	AB3	B	139	151	Right-handed alpha
Helix 13	AB4	B	167	175	Right-handed 310
Helix 14	AB5	B	176	191	Right-handed alpha
Helix 15	AB6	B	200	204	Right-handed 310
Helix 16	AB7	B	207	211	Right-handed 310
Helix 17	AB8	B	216	223	Right-handed alpha
Helix 18	AB9	B	226	231	Right-handed 310
Helix 19	AC1	B	260	273	Right-handed alpha
Helix 20	AC2	B	300	314	Right-handed alpha
Helix 21	AC3	D	15	19	Right-handed 310
Helix 22	AC4	D	139	151	Right-handed alpha
Helix 23	AC5	D	167	175	Right-handed 310
Helix 24	AC6	D	176	191	Right-handed alpha
Helix 25	AC7	D	200	204	Right-handed 310
Helix 26	AC8	D	207	211	Right-handed 310
Helix 27	AC9	D	216	223	Right-handed alpha
Helix 28	AD1	D	226	231	Right-handed 310
Helix 29	AD2	D	260	273	Right-handed alpha
Helix 30	AD3	D	300	314	Right-handed alpha
Helix 31	AD4	C	15	19	Right-handed 310
Helix 32	AD5	C	139	151	Right-handed alpha
Helix 33	AD6	C	167	175	Right-handed 310
Helix 34	AD7	C	176	191	Right-handed alpha
Helix 35	AD8	C	200	204	Right-handed 310
Helix 36	AD9	C	207	211	Right-handed 310
Helix 37	AE1	C	216	223	Right-handed alpha
Helix 38	AE2	C	226	231	Right-handed 310
Helix 39	AE3	C	260	273	Right-handed alpha
Helix 40	AE4	C	300	314	Right-handed alpha

There are 24 sheets in PDB entry 6OFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	34	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	73	75	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	57	61	anti-parallel
Strand 3	A	100	105	anti-parallel
Strand 4	A	112	117	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	158	161	parallel
Strand 3	A	128	133	parallel
Strand 4	A	388	394	anti-parallel
Strand 5	A	399	406	anti-parallel
Strand 6	A	416	421	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	245	249	anti-parallel
Strand 3	A	280	284	parallel
Strand 4	A	318	321	parallel
Strand 5	A	355	359	parallel
Strand 6	A	327	330	anti-parallel
Strand 7	A	380	384	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	348	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	34	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	86	92	anti-parallel
Strand 4	B	73	75	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	57	61	anti-parallel
Strand 3	B	100	105	anti-parallel
Strand 4	B	112	117	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	82	83	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	158	161	parallel
Strand 3	B	128	133	parallel
Strand 4	B	388	394	anti-parallel
Strand 5	B	399	406	anti-parallel
Strand 6	B	416	421	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	245	249	anti-parallel
Strand 3	B	280	284	parallel
Strand 4	B	318	321	parallel
Strand 5	B	355	359	parallel
Strand 6	B	327	330	anti-parallel
Strand 7	B	380	384	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	348	349	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	34	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	86	92	anti-parallel
Strand 4	D	73	75	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	70	first strand
Strand 2	D	57	61	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	112	117	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	82	83	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	158	161	parallel
Strand 3	D	128	133	parallel
Strand 4	D	388	394	anti-parallel
Strand 5	D	399	406	anti-parallel
Strand 6	D	416	421	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	245	249	anti-parallel
Strand 3	D	280	284	parallel
Strand 4	D	318	321	parallel
Strand 5	D	355	359	parallel
Strand 6	D	327	330	anti-parallel
Strand 7	D	380	384	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	348	349	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	34	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	73	75	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	56	61	anti-parallel
Strand 3	C	100	105	anti-parallel
Strand 4	C	112	117	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	158	161	parallel
Strand 3	C	128	133	parallel
Strand 4	C	388	394	anti-parallel
Strand 5	C	399	406	anti-parallel
Strand 6	C	416	421	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	245	249	anti-parallel
Strand 3	C	280	284	parallel
Strand 4	C	318	321	parallel
Strand 5	C	355	359	parallel
Strand 6	C	327	330	anti-parallel
Strand 7	C	380	384	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	348	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFD