Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OFQ entry

There are 2 chains in PDB entry 6OFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38LYS 549
B
 SER 1ALA 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6OFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 43Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
67 78Right-handed alpha
Helix 4
AA4
A
131 144Right-handed alpha
Helix 5
AA5
A
145 148Right-handed 310
Helix 6
AA6
A
157 164Right-handed alpha
Helix 7
AA7
A
164 168Right-handed alpha
Helix 8
AA8
A
190 195Right-handed alpha
Helix 9
AA9
A
196 201Right-handed 310
Helix 10
AB1
A
204 214Right-handed alpha
Helix 11
AB2
A
216 222Right-handed 310
Helix 12
AB3
A
266 276Right-handed alpha
Helix 13
AB4
A
286 288Right-handed 310
Helix 14
AB5
A
289 295Right-handed alpha
Helix 15
AB6
A
323 334Right-handed alpha
Helix 16
AB7
A
335 345Right-handed alpha
Helix 17
AB8
A
372 383Right-handed alpha
Helix 18
AB9
A
401 413Right-handed alpha
Helix 19
AC1
A
424 434Right-handed alpha
Helix 20
AC2
A
451 460Right-handed alpha
Helix 21
AC3
A
460 466Right-handed alpha
Helix 22
AC4
A
477 490Right-handed alpha
Helix 23
AC5
A
492 511Right-handed alpha
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There are 6 sheets in PDB entry 6OFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 236first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
48 53parallel
Strand 5
A
281 282parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
91 93anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
179 184anti-parallel
Strand 4
A
169 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 304first strand
Strand 2
A
521 526anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
513 519anti-parallel
Strand 3
A
308 314anti-parallel
Strand 4
A
439 445anti-parallel
Strand 5
A
389 396parallel
Strand 6
A
416 423parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
546 547anti-parallel
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