Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OFR entry

There is 1 chain in PDB entry 6OFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 29PHE 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6OFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 57Right-handed alpha
Helix 2
AA2
A
63 69Right-handed alpha
Helix 3
AA3
A
141 145Right-handed 310
Helix 4
AA4
A
191 193Right-handed 310
Helix 5
AA5
A
198 200Right-handed 310
Helix 6
AA6
A
201 208Right-handed alpha
Helix 7
AA7
A
514 525Right-handed alpha
Helix 8
AA8
A
640 644Right-handed 310
Helix 9
AA9
A
662 664Right-handed 310
Helix 10
AB1
A
714 718Right-handed 310
Helix 11
AB2
A
745 748Right-handed 310
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There are 9 sheets in PDB entry 6OFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
166 170anti-parallel
Strand 4
A
105 108parallel
Strand 5
A
111 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
94 96anti-parallel
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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
399 418anti-parallel
Strand 3
A
375 391anti-parallel
Strand 4
A
331 348anti-parallel
Strand 5
A
311 327anti-parallel
Strand 6
A
286 301anti-parallel
Strand 7
A
261 280anti-parallel
Strand 8
A
236 255anti-parallel
Strand 9
A
220 233anti-parallel
Strand 10
A
181 189anti-parallel
Strand 11
A
781 790anti-parallel
Strand 12
A
750 757anti-parallel
Strand 13
A
731 740anti-parallel
Strand 14
A
688 697anti-parallel
Strand 15
A
673 683anti-parallel
Strand 16
A
619 634anti-parallel
Strand 17
A
614 616anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
619 634anti-parallel
Strand 3
A
588 610anti-parallel
Strand 4
A
533 537parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
399 418anti-parallel
Strand 3
A
442 461anti-parallel
Strand 4
A
464 475anti-parallel
Strand 5
A
482 492anti-parallel
Strand 6
A
499 509anti-parallel
Strand 7
A
545 557anti-parallel
Strand 8
A
561 583anti-parallel
Strand 9
A
588 610anti-parallel
Strand 10
A
533 537parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
213 214anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
352 356anti-parallel
Strand 3
A
422 427parallel
Strand 4
A
433 439anti-parallel
Strand 5
A
526 527anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 660first strand
Strand 2
A
651 654anti-parallel
Strand 3
A
722 727parallel
Strand 4
A
701 705anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
774 776anti-parallel
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