Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OFT entry

There are 2 chains in PDB entry 6OFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27PRO 495
B
 ALA 27PHE 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6OFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 71Right-handed 310
Helix 2
AA2
A
77 86Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
132 149Right-handed alpha
Helix 5
AA5
A
153 171Right-handed alpha
Helix 6
AA6
A
173 187Right-handed alpha
Helix 7
AA7
A
190 195Right-handed 310
Helix 8
AA8
A
200 207Right-handed alpha
Helix 9
AA9
A
208 220Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
234 247Right-handed alpha
Helix 12
AB3
A
296 323Right-handed alpha
Helix 13
AB4
A
356 375Right-handed alpha
Helix 14
AB5
A
377 398Right-handed alpha
Helix 15
AB6
A
399 402Right-handed 310
Helix 16
AB7
A
403 418Right-handed alpha
Helix 17
AB8
A
423 435Right-handed alpha
Helix 18
AB9
A
436 438Right-handed 310
Helix 19
AC1
A
439 452Right-handed alpha
Helix 20
AC2
A
464 471Right-handed alpha
Helix 21
AC3
A
473 486Right-handed alpha
Helix 22
AC4
B
67 71Right-handed 310
Helix 23
AC5
B
77 86Right-handed alpha
Helix 24
AC6
B
87 89Right-handed 310
Helix 25
AC7
B
96 105Right-handed alpha
Helix 26
AC8
B
132 149Right-handed alpha
Helix 27
AC9
B
153 171Right-handed alpha
Helix 28
AD1
B
173 187Right-handed alpha
Helix 29
AD2
B
191 195Right-handed 310
Helix 30
AD3
B
200 207Right-handed alpha
Helix 31
AD4
B
208 220Right-handed alpha
Helix 32
AD5
B
221 223Right-handed 310
Helix 33
AD6
B
234 247Right-handed alpha
Helix 34
AD7
B
296 324Right-handed alpha
Helix 35
AD8
B
356 375Right-handed alpha
Helix 36
AD9
B
377 399Right-handed alpha
Helix 37
AE1
B
400 402Right-handed 310
Helix 38
AE2
B
403 418Right-handed alpha
Helix 39
AE3
B
423 434Right-handed alpha
Helix 40
AE4
B
435 438Right-handed 310
Helix 41
AE5
B
439 452Right-handed alpha
Helix 42
AE6
B
464 471Right-handed alpha
Helix 43
AE7
B
473 487Right-handed alpha
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There are 4 sheets in PDB entry 6OFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
225 231parallel
Strand 4
A
57 64anti-parallel
Strand 5
A
122 129anti-parallel
Strand 6
A
113 117anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 274first strand
Strand 2
A
456 462parallel
Strand 3
A
282 290anti-parallel
Strand 4
A
343 352anti-parallel
Strand 5
A
329 340anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
225 231parallel
Strand 4
B
57 64anti-parallel
Strand 5
B
122 129anti-parallel
Strand 6
B
113 117anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 274first strand
Strand 2
B
456 462parallel
Strand 3
B
282 290anti-parallel
Strand 4
B
343 352anti-parallel
Strand 5
B
329 340anti-parallel
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