Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OFW entry

There are 2 chains in PDB entry 6OFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PRO 282
B
 PRO 6PRO 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6OFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 55Right-handed alpha
Helix 2
AA2
A
75 94Right-handed alpha
Helix 3
AA3
A
104 115Right-handed alpha
Helix 4
AA4
A
129 138Right-handed alpha
Helix 5
AA5
A
161 180Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
198 208Right-handed alpha
Helix 8
AA8
A
208 213Right-handed alpha
Helix 9
AA9
A
214 216Right-handed 310
Helix 10
AB1
A
226 234Right-handed alpha
Helix 11
AB2
A
237 240Right-handed 310
Helix 12
AB3
A
241 255Right-handed alpha
Helix 13
AB4
A
264 280Right-handed alpha
Helix 14
AB5
B
29 33Right-handed 310
Helix 15
AB6
B
40 55Right-handed alpha
Helix 16
AB7
B
75 94Right-handed alpha
Helix 17
AB8
B
104 115Right-handed alpha
Helix 18
AB9
B
129 138Right-handed alpha
Helix 19
AC1
B
161 180Right-handed alpha
Helix 20
AC2
B
183 185Right-handed 310
Helix 21
AC3
B
198 208Right-handed alpha
Helix 22
AC4
B
209 216Right-handed 310
Helix 23
AC5
B
226 234Right-handed alpha
Helix 24
AC6
B
237 240Right-handed 310
Helix 25
AC7
B
241 255Right-handed alpha
Helix 26
AC8
B
264 280Right-handed alpha
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There are 4 sheets in PDB entry 6OFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
141 144parallel
Strand 3
A
118 121parallel
Strand 4
A
98 101parallel
Strand 5
A
59 63parallel
Strand 6
A
21 27parallel
Strand 7
A
259 262parallel
Strand 8
A
220 221parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
13 16anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
141 144parallel
Strand 3
B
118 121parallel
Strand 4
B
98 101parallel
Strand 5
B
59 63parallel
Strand 6
B
21 27parallel
Strand 7
B
259 262parallel
Strand 8
B
220 221parallel
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