Analysis of interatomic Contacts of Structural Units in PDB entry:
6OFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OFY entry

There are 2 chains in PDB entry 6OFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 33VAL 583
B
 HIS 32VAL 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6OFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 83Right-handed alpha
Helix 2
AA2
A
85 94Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
106 121Right-handed alpha
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
174 183Right-handed alpha
Helix 7
AA7
A
196 208Right-handed alpha
Helix 8
AA8
A
231 236Right-handed alpha
Helix 9
AA9
A
238 246Right-handed alpha
Helix 10
AB1
A
266 271Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
292 295Right-handed 310
Helix 13
AB4
A
296 321Right-handed alpha
Helix 14
AB5
A
325 348Right-handed alpha
Helix 15
AB6
A
348 355Right-handed alpha
Helix 16
AB7
A
363 368Right-handed 310
Helix 17
AB8
A
379 386Right-handed alpha
Helix 18
AB9
A
387 392Right-handed 310
Helix 19
AC1
A
404 409Right-handed alpha
Helix 20
AC2
A
412 419Right-handed alpha
Helix 21
AC3
A
419 430Right-handed alpha
Helix 22
AC4
A
442 444Right-handed 310
Helix 23
AC5
A
445 459Right-handed alpha
Helix 24
AC6
A
463 471Right-handed alpha
Helix 25
AC7
A
478 484Right-handed alpha
Helix 26
AC8
A
486 497Right-handed alpha
Helix 27
AC9
A
498 502Right-handed 310
Helix 28
AD1
A
503 511Right-handed alpha
Helix 29
AD2
A
520 537Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
547 552Right-handed 310
Helix 32
AD5
A
553 562Right-handed alpha
Helix 33
AD6
A
564 573Right-handed alpha
Helix 34
AD7
B
73 83Right-handed alpha
Helix 35
AD8
B
85 94Right-handed alpha
Helix 36
AD9
B
96 104Right-handed alpha
Helix 37
AE1
B
106 121Right-handed alpha
Helix 38
AE2
B
139 145Right-handed alpha
Helix 39
AE3
B
174 183Right-handed alpha
Helix 40
AE4
B
196 208Right-handed alpha
Helix 41
AE5
B
231 236Right-handed alpha
Helix 42
AE6
B
238 246Right-handed alpha
Helix 43
AE7
B
266 271Right-handed alpha
Helix 44
AE8
B
281 285Right-handed 310
Helix 45
AE9
B
292 295Right-handed 310
Helix 46
AF1
B
296 321Right-handed alpha
Helix 47
AF2
B
325 348Right-handed alpha
Helix 48
AF3
B
348 355Right-handed alpha
Helix 49
AF4
B
363 368Right-handed 310
Helix 50
AF5
B
379 386Right-handed alpha
Helix 51
AF6
B
388 392Right-handed 310
Helix 52
AF7
B
404 409Right-handed alpha
Helix 53
AF8
B
412 419Right-handed alpha
Helix 54
AF9
B
419 430Right-handed alpha
Helix 55
AG1
B
442 444Right-handed 310
Helix 56
AG2
B
445 459Right-handed alpha
Helix 57
AG3
B
463 471Right-handed alpha
Helix 58
AG4
B
478 484Right-handed alpha
Helix 59
AG5
B
486 497Right-handed alpha
Helix 60
AG6
B
498 502Right-handed 310
Helix 61
AG7
B
503 511Right-handed alpha
Helix 62
AG8
B
520 537Right-handed alpha
Helix 63
AG9
B
538 542Right-handed 310
Helix 64
AH1
B
547 552Right-handed 310
Helix 65
AH2
B
553 562Right-handed alpha
Helix 66
AH3
B
564 573Right-handed alpha
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There are 9 sheets in PDB entry 6OFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
55 58anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
261 263anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
401 403anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
55 58anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 72anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
150 151anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 258first strand
Strand 2
B
261 263anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
401 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il