Analysis of interatomic Contacts of Structural Units in PDB entry:
6OGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OGM entry

There are 12 chains in PDB entry 6OGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 65LEU 125
B
 PRO 1ALA 58
C
 PRO 1ALA 58
D
 PRO 1ALA 61
E
 MET 65ARG 127
F
 MET 65GLY 126
G
 MET 65LEU 125
H
 PRO 1ALA 58
I
 PRO 1ASP 59
J
 PRO 1ASP 59
K
 MET 65GLY 126
L
 MET 65LEU 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6OGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 97Right-handed alpha
Helix 2
AA2
A
99 102Right-handed 310
Helix 3
AA3
B
12 32Right-handed alpha
Helix 4
AA4
B
34 37Right-handed 310
Helix 5
AA5
B
46 48Right-handed 310
Helix 6
AA6
C
12 32Right-handed alpha
Helix 7
AA7
C
34 37Right-handed 310
Helix 8
AA8
C
46 48Right-handed 310
Helix 9
AA9
D
12 32Right-handed alpha
Helix 10
AB1
D
34 37Right-handed 310
Helix 11
AB2
D
46 48Right-handed 310
Helix 12
AB3
D
58 60Right-handed 310
Helix 13
AB4
E
77 97Right-handed alpha
Helix 14
AB5
E
99 102Right-handed 310
Helix 15
AB6
F
77 97Right-handed alpha
Helix 16
AB7
F
99 102Right-handed 310
Helix 17
AB8
G
77 97Right-handed alpha
Helix 18
AB9
G
99 102Right-handed 310
Helix 19
AC1
H
12 32Right-handed alpha
Helix 20
AC2
H
34 37Right-handed 310
Helix 21
AC3
H
46 48Right-handed 310
Helix 22
AC4
I
12 32Right-handed alpha
Helix 23
AC5
I
34 37Right-handed 310
Helix 24
AC6
I
46 48Right-handed 310
Helix 25
AC7
J
12 32Right-handed alpha
Helix 26
AC8
J
34 37Right-handed 310
Helix 27
AC9
J
46 48Right-handed 310
Helix 28
AD1
K
77 97Right-handed alpha
Helix 29
AD2
K
99 102Right-handed 310
Helix 30
AD3
L
77 97Right-handed alpha
Helix 31
AD4
L
99 102Right-handed 310
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There are 6 sheets in PDB entry 6OGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
50 52anti-parallel
Strand 3
A
104 110anti-parallel
Strand 4
A
67 73parallel
Strand 5
C
2 8anti-parallel
Strand 6
C
39 45parallel
Strand 7
E
115 117anti-parallel
Strand 8
E
120 121anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
115 117anti-parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
2 8parallel
Strand 5
E
67 73anti-parallel
Strand 6
E
104 110parallel
Strand 7
F
115 117anti-parallel
Strand 8
F
120 121anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
50 52anti-parallel
Strand 3
D
39 45anti-parallel
Strand 4
D
2 8parallel
Strand 5
F
67 73anti-parallel
Strand 6
F
104 110parallel
Strand 7
C
50 52anti-parallel
Strand 8
C
55 56anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
55 56first strand
Strand 2
J
50 52anti-parallel
Strand 3
G
104 110anti-parallel
Strand 4
G
67 73parallel
Strand 5
I
2 8anti-parallel
Strand 6
I
39 45parallel
Strand 7
K
115 117anti-parallel
Strand 8
K
120 121anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
120 121first strand
Strand 2
G
115 117anti-parallel
Strand 3
H
39 45anti-parallel
Strand 4
H
2 8parallel
Strand 5
K
67 73anti-parallel
Strand 6
K
104 110parallel
Strand 7
L
115 117anti-parallel
Strand 8
L
120 121anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
55 56first strand
Strand 2
H
50 52anti-parallel
Strand 3
J
39 45anti-parallel
Strand 4
J
2 8parallel
Strand 5
L
67 73anti-parallel
Strand 6
L
104 110parallel
Strand 7
I
50 52anti-parallel
Strand 8
I
55 56anti-parallel
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