Analysis of interatomic Contacts of Structural Units in PDB entry:
6OGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OGN entry

There is 1 chain in PDB entry 6OGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34ALA 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6OGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 41Right-handed alpha
Helix 2
AA2
A
41 62Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
122 126Right-handed 310
Helix 6
AA6
A
154 166Right-handed alpha
Helix 7
AA7
A
187 192Right-handed alpha
Helix 8
AA8
A
213 219Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
234 238Right-handed 310
Helix 11
AB2
A
298 302Right-handed 310
Helix 12
AB3
A
304 308Right-handed 310
Helix 13
AB4
A
369 374Right-handed alpha
Helix 14
AB5
A
375 383Right-handed alpha
Helix 15
AB6
A
384 399Right-handed alpha
Helix 16
AB7
A
413 421Right-handed alpha
Helix 17
AB8
A
432 446Right-handed alpha
Helix 18
AB9
A
458 462Right-handed 310
Helix 19
AC1
A
464 468Right-handed 310
Helix 20
AC2
A
486 490Right-handed 310
Helix 21
AC3
A
491 500Right-handed alpha
Helix 22
AC4
A
526 532Right-handed 310
Helix 23
AC5
A
565 569Right-handed 310
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There are 10 sheets in PDB entry 6OGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
89 93parallel
Strand 3
A
67 71parallel
Strand 4
A
138 143parallel
Strand 5
A
167 174parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
316 327anti-parallel
Strand 3
A
273 285anti-parallel
Strand 4
A
177 186anti-parallel
Strand 5
A
245 251anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
177 186anti-parallel
Strand 3
A
273 285anti-parallel
Strand 4
A
293 295anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
206 210anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
333 339anti-parallel
Strand 3
A
344 348anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
425 429parallel
Strand 3
A
404 407parallel
Strand 4
A
472 476parallel
Strand 5
A
504 511parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
647 651anti-parallel
Strand 3
A
610 620anti-parallel
Strand 4
A
514 524anti-parallel
Strand 5
A
578 584anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
514 524anti-parallel
Strand 3
A
610 620anti-parallel
Strand 4
A
623 626anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
540 541anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 600first strand
Strand 2
A
668 674anti-parallel
Strand 3
A
681 687anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il