Analysis of interatomic Contacts of Structural Units in PDB entry:
6OI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OI9 entry

There are 2 chains in PDB entry 6OI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 447
B	MET 1	GLN 447

There are 38 helices in PDB entry 6OI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	35	37	Right-handed 310
Helix 3	AA3	A	39	45	Right-handed alpha
Helix 4	AA4	A	55	59	Right-handed 310
Helix 5	AA5	A	62	74	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	106	115	Right-handed alpha
Helix 8	AA8	A	115	127	Right-handed alpha
Helix 9	AA9	A	141	153	Right-handed alpha
Helix 10	AB1	A	174	176	Right-handed 310
Helix 11	AB2	A	177	194	Right-handed alpha
Helix 12	AB3	A	249	268	Right-handed alpha
Helix 13	AB4	A	296	305	Right-handed alpha
Helix 14	AB5	A	307	318	Right-handed alpha
Helix 15	AB6	A	324	328	Right-handed 310
Helix 16	AB7	A	394	409	Right-handed alpha
Helix 17	AB8	A	417	426	Right-handed alpha
Helix 18	AB9	A	427	433	Right-handed alpha
Helix 19	AC1	A	438	446	Right-handed alpha
Helix 20	AC2	B	10	24	Right-handed alpha
Helix 21	AC3	B	35	37	Right-handed 310
Helix 22	AC4	B	39	45	Right-handed alpha
Helix 23	AC5	B	55	59	Right-handed 310
Helix 24	AC6	B	62	73	Right-handed alpha
Helix 25	AC7	B	88	98	Right-handed alpha
Helix 26	AC8	B	106	115	Right-handed alpha
Helix 27	AC9	B	115	127	Right-handed alpha
Helix 28	AD1	B	141	153	Right-handed alpha
Helix 29	AD2	B	174	176	Right-handed 310
Helix 30	AD3	B	177	194	Right-handed alpha
Helix 31	AD4	B	249	267	Right-handed alpha
Helix 32	AD5	B	296	305	Right-handed alpha
Helix 33	AD6	B	307	317	Right-handed alpha
Helix 34	AD7	B	324	328	Right-handed 310
Helix 35	AD8	B	394	409	Right-handed alpha
Helix 36	AD9	B	417	426	Right-handed alpha
Helix 37	AE1	B	427	433	Right-handed alpha
Helix 38	AE2	B	438	446	Right-handed alpha

There are 10 sheets in PDB entry 6OI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	27	33	parallel
Strand 3	A	4	7	parallel
Strand 4	A	77	79	parallel
Strand 5	A	101	102	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	156	160	anti-parallel
Strand 3	A	198	202	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	290	first strand
Strand 2	A	271	280	anti-parallel
Strand 3	A	208	216	anti-parallel
Strand 4	A	222	234	anti-parallel
Strand 5	A	237	243	anti-parallel
Strand 6	A	333	340	anti-parallel
Strand 7	A	384	392	anti-parallel
Strand 8	A	365	368	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	376	377	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	410	412	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	27	33	parallel
Strand 3	B	4	7	parallel
Strand 4	B	77	79	parallel
Strand 5	B	101	102	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	198	202	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	290	first strand
Strand 2	B	270	280	anti-parallel
Strand 3	B	208	217	anti-parallel
Strand 4	B	222	234	anti-parallel
Strand 5	B	237	243	anti-parallel
Strand 6	B	333	340	anti-parallel
Strand 7	B	384	392	anti-parallel
Strand 8	B	365	368	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	376	377	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	410	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OI9