Analysis of interatomic Contacts of Structural Units in PDB entry:
6OID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OID entry

There are 2 chains in PDB entry 6OID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LEU 295
B
 ASP 7LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6OID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
56 72Right-handed alpha
Helix 3
AA3
A
106 121Right-handed alpha
Helix 4
AA4
A
147 156Right-handed alpha
Helix 5
AA5
A
156 169Right-handed alpha
Helix 6
AA6
A
170 183Right-handed alpha
Helix 7
AA7
A
184 189Right-handed 310
Helix 8
AA8
A
203 205Right-handed 310
Helix 9
AA9
A
226 232Right-handed 310
Helix 10
AB1
A
233 237Right-handed 310
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
260 277Right-handed alpha
Helix 13
AB4
A
280 295Right-handed alpha
Helix 14
AB5
B
8 15Right-handed alpha
Helix 15
AB6
B
56 72Right-handed alpha
Helix 16
AB7
B
106 121Right-handed alpha
Helix 17
AB8
B
147 156Right-handed alpha
Helix 18
AB9
B
156 169Right-handed alpha
Helix 19
AC1
B
170 183Right-handed alpha
Helix 20
AC2
B
184 189Right-handed 310
Helix 21
AC3
B
203 205Right-handed 310
Helix 22
AC4
B
226 232Right-handed 310
Helix 23
AC5
B
233 237Right-handed 310
Helix 24
AC6
B
240 251Right-handed alpha
Helix 25
AC7
B
256 277Right-handed alpha
Helix 26
AC8
B
280 295Right-handed alpha
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There are 8 sheets in PDB entry 6OID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
44 51anti-parallel
Strand 4
B
91 96anti-parallel
Strand 5
B
80 85anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
44 51anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
B
22 29anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
138 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
223 225anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
215 217anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
138 140anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
223 225anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
215 217anti-parallel
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