Analysis of interatomic Contacts of Structural Units in PDB entry:
6OIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OIJ entry

There are 5 chains in PDB entry 6OIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	VAL 359
R	PRO 22	PRO 446
H	ASP 1	LYS 248
B	SER 2	ASN 340
G	ASN 5	GLU 63

There are 28 helices in PDB entry 6OIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	37	Right-handed alpha
Helix 2	AA2	A	51	63	Right-handed alpha
Helix 3	AA3	A	212	217	Right-handed alpha
Helix 4	AA4	A	218	221	Right-handed 310
Helix 5	AA5	A	246	260	Right-handed alpha
Helix 6	AA6	A	275	286	Right-handed alpha
Helix 7	AA7	A	302	315	Right-handed alpha
Helix 8	AA8	A	336	356	Right-handed alpha
Helix 9	AA9	R	23	53	Right-handed alpha
Helix 10	AB1	R	58	77	Right-handed alpha
Helix 11	AB2	R	78	89	Right-handed alpha
Helix 12	AB3	R	94	129	Right-handed alpha
Helix 13	AB4	R	129	137	Right-handed alpha
Helix 14	AB5	R	138	168	Right-handed alpha
Helix 15	AB6	R	180	184	Right-handed 310
Helix 16	AB7	R	185	197	Right-handed alpha
Helix 17	AB8	R	197	226	Right-handed alpha
Helix 18	AB9	R	361	389	Right-handed alpha
Helix 19	AC1	R	397	414	Right-handed alpha
Helix 20	AC2	R	414	419	Right-handed alpha
Helix 21	AC3	R	422	432	Right-handed alpha
Helix 22	AC4	R	438	442	Right-handed 310
Helix 23	AC5	H	28	32	Right-handed 310
Helix 24	AC6	B	3	26	Right-handed alpha
Helix 25	AC7	B	29	34	Right-handed alpha
Helix 26	AC8	B	35	37	Right-handed 310
Helix 27	AC9	G	7	22	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha

There are 14 sheets in PDB entry 6OIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	326	328	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	115	117	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	211	216	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	185	190	anti-parallel
Strand 3	H	174	179	anti-parallel
Strand 4	H	225	231	anti-parallel
Strand 5	H	244	245	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	180	181	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OIJ