Analysis of interatomic Contacts of Structural Units in PDB entry:
6OIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OIS entry

There are 6 chains in PDB entry 6OIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 39	PRO 161
B	ALA 39	LYS 163
C	ASN 52	CYS 405
D	ASP 117	THR 352
E	ASN 52	CYS 405
F	ASP 117	THR 352

There are 61 helices in PDB entry 6OIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	58	Right-handed alpha
Helix 2	AA2	A	72	84	Right-handed alpha
Helix 3	AA3	A	89	102	Right-handed alpha
Helix 4	AA4	A	112	117	Right-handed alpha
Helix 5	AA5	A	118	136	Right-handed alpha
Helix 6	AA6	A	138	149	Right-handed alpha
Helix 7	AA7	A	151	155	Right-handed 310
Helix 8	AA8	B	40	58	Right-handed alpha
Helix 9	AA9	B	72	84	Right-handed alpha
Helix 10	AB1	B	89	103	Right-handed alpha
Helix 11	AB2	B	112	117	Right-handed alpha
Helix 12	AB3	B	118	136	Right-handed alpha
Helix 13	AB4	B	138	149	Right-handed alpha
Helix 14	AB5	B	151	155	Right-handed 310
Helix 15	AB6	C	53	99	Right-handed alpha
Helix 16	AB7	C	118	125	Right-handed alpha
Helix 17	AB8	C	128	139	Right-handed alpha
Helix 18	AB9	C	148	152	Right-handed alpha
Helix 19	AC1	C	157	160	Right-handed alpha
Helix 20	AC2	C	165	181	Right-handed alpha
Helix 21	AC3	C	188	194	Right-handed alpha
Helix 22	AC4	C	208	218	Right-handed alpha
Helix 23	AC5	C	277	280	Right-handed 310
Helix 24	AC6	C	293	299	Right-handed alpha
Helix 25	AC7	C	307	314	Right-handed alpha
Helix 26	AC8	C	354	405	Right-handed alpha
Helix 27	AC9	D	118	125	Right-handed alpha
Helix 28	AD1	D	129	139	Right-handed alpha
Helix 29	AD2	D	148	152	Right-handed alpha
Helix 30	AD3	D	157	160	Right-handed alpha
Helix 31	AD4	D	166	181	Right-handed alpha
Helix 32	AD5	D	188	196	Right-handed alpha
Helix 33	AD6	D	208	218	Right-handed alpha
Helix 34	AD7	D	244	248	Right-handed 310
Helix 35	AD8	D	277	280	Right-handed 310
Helix 36	AD9	D	293	299	Right-handed alpha
Helix 37	AE1	D	307	313	Right-handed alpha
Helix 38	AE2	E	53	98	Right-handed alpha
Helix 39	AE3	E	118	125	Right-handed alpha
Helix 40	AE4	E	128	139	Right-handed alpha
Helix 41	AE5	E	148	152	Right-handed alpha
Helix 42	AE6	E	157	160	Right-handed alpha
Helix 43	AE7	E	165	182	Right-handed alpha
Helix 44	AE8	E	188	196	Right-handed alpha
Helix 45	AE9	E	208	218	Right-handed alpha
Helix 46	AF1	E	244	248	Right-handed 310
Helix 47	AF2	E	277	280	Right-handed 310
Helix 48	AF3	E	289	299	Right-handed alpha
Helix 49	AF4	E	307	314	Right-handed alpha
Helix 50	AF5	E	355	404	Right-handed alpha
Helix 51	AF6	F	118	125	Right-handed alpha
Helix 52	AF7	F	129	139	Right-handed alpha
Helix 53	AF8	F	148	152	Right-handed alpha
Helix 54	AF9	F	157	160	Right-handed alpha
Helix 55	AG1	F	166	181	Right-handed alpha
Helix 56	AG2	F	188	196	Right-handed alpha
Helix 57	AG3	F	208	218	Right-handed alpha
Helix 58	AG4	F	244	248	Right-handed 310
Helix 59	AG5	F	277	280	Right-handed 310
Helix 60	AG6	F	293	299	Right-handed alpha
Helix 61	AG7	F	307	313	Right-handed alpha

There are 12 sheets in PDB entry 6OIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	184	186	anti-parallel
Strand 3	C	225	229	parallel
Strand 4	D	335	338	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	274	275	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	268	first strand
Strand 2	C	303	305	anti-parallel
Strand 3	C	322	324	parallel
Strand 4	C	329	330	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	D	225	229	anti-parallel
Strand 3	D	184	186	parallel
Strand 4	D	153	156	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	274	275	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	268	first strand
Strand 2	D	302	305	anti-parallel
Strand 3	D	321	324	parallel
Strand 4	D	329	330	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	156	first strand
Strand 2	E	184	186	anti-parallel
Strand 3	E	225	229	parallel
Strand 4	F	335	338	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	274	275	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	268	first strand
Strand 2	E	302	305	anti-parallel
Strand 3	E	321	324	parallel
Strand 4	E	329	330	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	335	338	first strand
Strand 2	F	225	229	anti-parallel
Strand 3	F	184	186	parallel
Strand 4	F	153	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	162	first strand
Strand 2	F	274	275	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	268	first strand
Strand 2	F	302	305	anti-parallel
Strand 3	F	321	324	parallel
Strand 4	F	329	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OIS