Analysis of interatomic Contacts of Structural Units in PDB entry:
6OIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OIY entry

There are 3 chains in PDB entry 6OIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 504
B
 ALA 2GLU 504
C
 ALA 2ARG 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are149 helices in PDB entry 6OIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
24 41Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
48 50Right-handed 310
Helix 5
AA5
A
65 91Right-handed alpha
Helix 6
AA6
A
92 97Right-handed alpha
Helix 7
AA7
A
102 116Right-handed alpha
Helix 8
AA8
A
125 140Right-handed alpha
Helix 9
AA9
A
141 145Right-handed 310
Helix 10
AB1
A
168 180Right-handed alpha
Helix 11
AB2
A
184 195Right-handed alpha
Helix 12
AB3
A
202 208Right-handed alpha
Helix 13
AB4
A
236 238Right-handed 310
Helix 14
AB5
A
239 250Right-handed alpha
Helix 15
AB6
A
260 283Right-handed alpha
Helix 16
AB7
A
287 297Right-handed alpha
Helix 17
AB8
A
306 320Right-handed alpha
Helix 18
AB9
A
329 361Right-handed alpha
Helix 19
AC1
A
373 390Right-handed alpha
Helix 20
AC2
A
393 420Right-handed alpha
Helix 21
AC3
A
421 431Right-handed alpha
Helix 22
AC4
A
437 445Right-handed alpha
Helix 23
AC5
A
448 461Right-handed alpha
Helix 24
AC6
A
468 487Right-handed alpha
Helix 25
AC7
A
489 501Right-handed alpha
Helix 26
AC8
B
5 9Right-handed 310
Helix 27
AC9
B
24 41Right-handed alpha
Helix 28
AD1
B
42 47Right-handed alpha
Helix 29
AD2
B
48 51Right-handed 310
Helix 30
AD3
B
65 91Right-handed alpha
Helix 31
AD4
B
93 97Right-handed 310
Helix 32
AD5
B
102 116Right-handed alpha
Helix 33
AD6
B
125 138Right-handed alpha
Helix 34
AD7
B
143 147Right-handed 310
Helix 35
AD8
B
169 180Right-handed alpha
Helix 36
AD9
B
184 195Right-handed alpha
Helix 37
AE1
B
202 208Right-handed alpha
Helix 38
AE2
B
236 238Right-handed 310
Helix 39
AE3
B
239 250Right-handed alpha
Helix 40
AE4
B
260 283Right-handed alpha
Helix 41
AE5
B
287 297Right-handed alpha
Helix 42
AE6
B
306 320Right-handed alpha
Helix 43
AE7
B
328 343Right-handed alpha
Helix 44
AE8
B
344 361Right-handed alpha
Helix 45
AE9
B
375 390Right-handed alpha
Helix 46
AF1
B
393 420Right-handed alpha
Helix 47
AF2
B
421 431Right-handed alpha
Helix 48
AF3
B
437 447Right-handed alpha
Helix 49
AF4
B
448 461Right-handed alpha
Helix 50
AF5
B
468 487Right-handed alpha
Helix 51
AF6
B
489 501Right-handed alpha
Helix 52
AF7
C
5 9Right-handed 310
Helix 53
AF8
C
24 41Right-handed alpha
Helix 54
AF9
C
42 47Right-handed alpha
Helix 55
AG1
C
48 51Right-handed 310
Helix 56
AG2
C
65 91Right-handed alpha
Helix 57
AG3
C
102 117Right-handed alpha
Helix 58
AG4
C
125 138Right-handed alpha
Helix 59
AG5
C
141 146Right-handed alpha
Helix 60
AG6
C
168 180Right-handed alpha
Helix 61
AG7
C
184 194Right-handed alpha
Helix 62
AG8
C
202 209Right-handed alpha
Helix 63
AG9
C
236 238Right-handed 310
Helix 64
AH1
C
239 250Right-handed alpha
Helix 65
AH2
C
260 283Right-handed alpha
Helix 66
AH3
C
287 297Right-handed alpha
Helix 67
AH4
C
305 321Right-handed alpha
Helix 68
AH5
C
327 361Right-handed alpha
Helix 69
AH6
C
373 390Right-handed alpha
Helix 70
AH7
C
393 420Right-handed alpha
Helix 71
AH8
C
421 431Right-handed alpha
Helix 72
AH9
C
437 447Right-handed alpha
Helix 73
AI1
C
448 461Right-handed alpha
Helix 74
AI2
C
468 487Right-handed alpha
Helix 75
AI3
C
489 501Right-handed alpha
Helix 76
AI4
D
5 9Right-handed 310
Helix 77
AI5
D
24 41Right-handed alpha
Helix 78
AI6
D
42 47Right-handed alpha
Helix 79
AI7
D
48 51Right-handed 310
Helix 80
AI8
D
65 90Right-handed alpha
Helix 81
AI9
D
92 97Right-handed alpha
Helix 82
AJ1
D
102 116Right-handed alpha
Helix 83
AJ2
D
124 138Right-handed alpha
Helix 84
AJ3
D
143 147Right-handed 310
Helix 85
AJ4
D
168 181Right-handed alpha
Helix 86
AJ5
D
184 194Right-handed alpha
Helix 87
AJ6
D
202 208Right-handed alpha
Helix 88
AJ7
D
236 238Right-handed 310
Helix 89
AJ8
D
239 250Right-handed alpha
Helix 90
AJ9
D
260 283Right-handed alpha
Helix 91
AK1
D
287 297Right-handed alpha
Helix 92
AK2
D
306 320Right-handed alpha
Helix 93
AK3
D
329 361Right-handed alpha
Helix 94
AK4
D
373 390Right-handed alpha
Helix 95
AK5
D
393 420Right-handed alpha
Helix 96
AK6
D
421 431Right-handed alpha
Helix 97
AK7
D
437 447Right-handed alpha
Helix 98
AK8
D
448 461Right-handed alpha
Helix 99
AK9
D
468 487Right-handed alpha
Helix 100
AL1
D
489 501Right-handed alpha
Helix 101
AL2
E
5 9Right-handed 310
Helix 102
AL3
E
24 41Right-handed alpha
Helix 103
AL4
E
42 47Right-handed alpha
Helix 104
AL5
E
48 51Right-handed 310
Helix 105
AL6
E
65 91Right-handed alpha
Helix 106
AL7
E
94 101Right-handed 310
Helix 107
AL8
E
102 116Right-handed alpha
Helix 108
AL9
E
125 140Right-handed alpha
Helix 109
AM1
E
141 146Right-handed alpha
Helix 110
AM2
E
168 180Right-handed alpha
Helix 111
AM3
E
184 194Right-handed alpha
Helix 112
AM4
E
202 208Right-handed alpha
Helix 113
AM5
E
236 238Right-handed 310
Helix 114
AM6
E
239 250Right-handed alpha
Helix 115
AM7
E
260 283Right-handed alpha
Helix 116
AM8
E
287 297Right-handed alpha
Helix 117
AM9
E
306 320Right-handed alpha
Helix 118
AN1
E
328 361Right-handed alpha
Helix 119
AN2
E
373 390Right-handed alpha
Helix 120
AN3
E
393 420Right-handed alpha
Helix 121
AN4
E
421 431Right-handed alpha
Helix 122
AN5
E
437 445Right-handed alpha
Helix 123
AN6
E
448 461Right-handed alpha
Helix 124
AN7
E
468 487Right-handed alpha
Helix 125
AN8
E
489 501Right-handed alpha
Helix 126
AN9
F
5 9Right-handed 310
Helix 127
AO1
F
24 41Right-handed alpha
Helix 128
AO2
F
42 47Right-handed alpha
Helix 129
AO3
F
48 50Right-handed 310
Helix 130
AO4
F
65 91Right-handed alpha
Helix 131
AO5
F
94 98Right-handed 310
Helix 132
AO6
F
102 116Right-handed alpha
Helix 133
AO7
F
125 138Right-handed alpha
Helix 134
AO8
F
168 180Right-handed alpha
Helix 135
AO9
F
184 194Right-handed alpha
Helix 136
AP1
F
202 208Right-handed alpha
Helix 137
AP2
F
236 238Right-handed 310
Helix 138
AP3
F
239 250Right-handed alpha
Helix 139
AP4
F
260 283Right-handed alpha
Helix 140
AP5
F
287 297Right-handed alpha
Helix 141
AP6
F
306 320Right-handed alpha
Helix 142
AP7
F
328 361Right-handed alpha
Helix 143
AP8
F
373 390Right-handed alpha
Helix 144
AP9
F
393 420Right-handed alpha
Helix 145
AQ1
F
421 431Right-handed alpha
Helix 146
AQ2
F
437 447Right-handed alpha
Helix 147
AQ3
F
448 461Right-handed alpha
Helix 148
AQ4
F
468 487Right-handed alpha
Helix 149
AQ5
F
489 500Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6OIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
233 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
233 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 215first strand
Strand 2
C
233 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 215first strand
Strand 2
D
233 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
214 215first strand
Strand 2
E
233 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
214 215first strand
Strand 2
F
233 235parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il