Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OJB entry

There is 1 chain in PDB entry 6OJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 68CYS 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6OJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 119Right-handed alpha
Helix 2
AA2
A
138 142Right-handed 310
Helix 3
AA3
A
143 145Right-handed 310
Helix 4
AA4
A
164 181Right-handed alpha
Helix 5
AA5
A
192 196Right-handed 310
Helix 6
AA6
A
203 221Right-handed alpha
Helix 7
AA7
A
230 232Right-handed 310
Helix 8
AA8
A
233 238Right-handed alpha
Helix 9
AA9
A
239 241Right-handed 310
Helix 10
AB1
A
254 259Right-handed alpha
Helix 11
AB2
A
259 264Right-handed alpha
Helix 12
AB3
A
286 295Right-handed alpha
Helix 13
AB4
A
298 300Right-handed 310
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There are 3 sheets in PDB entry 6OJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
100 104parallel
Strand 3
A
122 128parallel
Strand 4
A
185 189parallel
Strand 5
A
224 225parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
147 150anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
244 247parallel
Strand 3
A
268 272parallel
Strand 4
A
302 307parallel
Strand 5
A
315 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il