Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OJD entry

There are 4 chains in PDB entry 6OJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1696GLY 1922
B
 TYR 1697GLY 1923
C
 TYR 1697GLY 1923
D
 TYR 1697GLU 1717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6OJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1720 1727Right-handed 310
Helix 2
AA2
A
1752 1768Right-handed alpha
Helix 3
AA3
A
1779 1795Right-handed alpha
Helix 4
AA4
A
1809 1813Right-handed 310
Helix 5
AA5
A
1818 1830Right-handed alpha
Helix 6
AA6
A
1836 1856Right-handed alpha
Helix 7
AA7
A
1877 1882Right-handed alpha
Helix 8
AA8
A
1900 1904Right-handed 310
Helix 9
AA9
A
1906 1922Right-handed alpha
Helix 10
AB1
B
1720 1730Right-handed 310
Helix 11
AB2
B
1752 1768Right-handed alpha
Helix 12
AB3
B
1779 1795Right-handed alpha
Helix 13
AB4
B
1809 1813Right-handed 310
Helix 14
AB5
B
1818 1830Right-handed alpha
Helix 15
AB6
B
1836 1856Right-handed alpha
Helix 16
AB7
B
1877 1882Right-handed alpha
Helix 17
AB8
B
1900 1904Right-handed 310
Helix 18
AB9
B
1909 1921Right-handed alpha
Helix 19
AC1
C
1720 1730Right-handed 310
Helix 20
AC2
C
1752 1768Right-handed alpha
Helix 21
AC3
C
1779 1795Right-handed alpha
Helix 22
AC4
C
1818 1830Right-handed alpha
Helix 23
AC5
C
1836 1856Right-handed alpha
Helix 24
AC6
C
1879 1883Right-handed 310
Helix 25
AC7
C
1900 1904Right-handed 310
Helix 26
AC8
C
1909 1922Right-handed alpha
Helix 27
AC9
D
1720 1730Right-handed 310
Helix 28
AD1
D
1752 1768Right-handed alpha
Helix 29
AD2
D
1779 1795Right-handed alpha
Helix 30
AD3
D
1820 1830Right-handed alpha
Helix 31
AD4
D
1836 1856Right-handed alpha
Helix 32
AD5
D
1877 1882Right-handed alpha
Helix 33
AD6
D
1900 1904Right-handed 310
Helix 34
AD7
D
1909 1922Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6OJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1698 1701first strand
Strand 2
A
1734 1738anti-parallel
Strand 3
A
1709 1713parallel
Strand 4
A
1773 1778parallel
Strand 5
A
1799 1805parallel
Strand 6
A
1865 1869parallel
Strand 7
A
1892 1896parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1698 1701first strand
Strand 2
B
1735 1738anti-parallel
Strand 3
B
1710 1713parallel
Strand 4
B
1773 1778parallel
Strand 5
B
1799 1805parallel
Strand 6
B
1865 1869parallel
Strand 7
B
1892 1896parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1698 1701first strand
Strand 2
C
1735 1738anti-parallel
Strand 3
C
1710 1713parallel
Strand 4
C
1773 1778parallel
Strand 5
C
1799 1805parallel
Strand 6
C
1865 1869parallel
Strand 7
C
1892 1896parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1698 1701first strand
Strand 2
D
1735 1738anti-parallel
Strand 3
D
1710 1713parallel
Strand 4
D
1773 1778parallel
Strand 5
D
1799 1805parallel
Strand 6
D
1865 1869parallel
Strand 7
D
1892 1896parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il