Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OJH entry

There is 1 chain in PDB entry 6OJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6OJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
35 37Right-handed 310
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
55 59Right-handed 310
Helix 5
AA5
A
62 74Right-handed alpha
Helix 6
AA6
A
88 98Right-handed alpha
Helix 7
AA7
A
106 115Right-handed alpha
Helix 8
AA8
A
115 127Right-handed alpha
Helix 9
AA9
A
141 153Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
177 194Right-handed alpha
Helix 12
AB3
A
249 268Right-handed alpha
Helix 13
AB4
A
296 305Right-handed alpha
Helix 14
AB5
A
307 317Right-handed alpha
Helix 15
AB6
A
324 328Right-handed 310
Helix 16
AB7
A
394 409Right-handed alpha
Helix 17
AB8
A
417 427Right-handed alpha
Helix 18
AB9
A
427 433Right-handed alpha
Helix 19
AC1
A
438 445Right-handed alpha
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There are 5 sheets in PDB entry 6OJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
27 33parallel
Strand 3
A
4 7parallel
Strand 4
A
77 79parallel
Strand 5
A
101 102parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
198 202anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 290first strand
Strand 2
A
271 280anti-parallel
Strand 3
A
208 216anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
237 243anti-parallel
Strand 6
A
333 340anti-parallel
Strand 7
A
384 392anti-parallel
Strand 8
A
365 368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il